PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016443396.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 355aa MW: 40833.8 Da PI: 6.8448

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016443396.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108.9	7.7e-34	111	245	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............................. 65 a+g+kdrhsk++T+ g+RdRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l ++ XP_016443396.1 111 ATGRKDRHSKVSTASGPRDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAKAAIDALENNpfqvlsrkvdstnkalnwrtinveneegqf 205 589**************************************************************999999877766655555544442222222 PP TCP 66 ssssaseceaesssssasnsssg.......................k 89 ++ss++s++ s ++ + XP_016443396.1 206 V-------LEQSSKVSQEYSDIPkyecgvqnespngnlslfssvndA 245 0.......333333333322222333333332223333333222220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.8E-30	112	264	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	30.369	114	172	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MNHQLQVLDE DYKSSSEEEE KEKEDIVFQE NILPSHYQNH HFHQLCQTHA DSHYAKWANF 60 TSSSATLVPK HQNNAQCPSF KQEIKNVSPK KKPKRTNTDV IEVHRSRIVR ATGRKDRHSK 120 VSTASGPRDR RVRLSPNTAI QFYDVQDRLG YDRPSKAIDW LIKEAKAAID ALENNPFQVL 180 SRKVDSTNKA LNWRTINVEN EEGQFVLEQS SKVSQEYSDI PKYECGVQNE SPNGNLSLFS 240 SVNDAKIQSV SDFQRYQQGH FHSETKNQAQ CNFYNFQSSQ DQSVIFSTNS NLELREDSTF 300 SFLSHNFPSI LGQNQFFNQR EYLQSSFLAQ TSVPLNTQFQ TSSYANNEFS SDGLL

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MNHQLQVLDE DYKSSSEEEE KEKEDIVFQE NILPSHYQNH HFHQLCQTHA DSHYAKWANF  60
TSSSATLVPK HQNNAQCPSF KQEIKNVSPK KKPKRTNTDV IEVHRSRIVR ATGRKDRHSK  120
VSTASGPRDR RVRLSPNTAI QFYDVQDRLG YDRPSKAIDW LIKEAKAAID ALENNPFQVL  180
SRKVDSTNKA LNWRTINVEN EEGQFVLEQS SKVSQEYSDI PKYECGVQNE SPNGNLSLFS  240
SVNDAKIQSV SDFQRYQQGH FHSETKNQAQ CNFYNFQSSQ DQSVIFSTNS NLELREDSTF  300
SFLSHNFPSI LGQNQFFNQR EYLQSSFLAQ TSVPLNTQFQ TSSYANNEFS SDGLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-19	119	172	1	54	Putative transcription factor PCF6
5zkt_B	4e-19	119	172	1	54	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016443396.1	0.0	PREDICTED: transcription factor TCP3-like
TrEMBL	A0A1S3XTX7	0.0	A0A1S3XTX7_TOBAC; transcription factor TCP3-like
STRING	XP_009771449.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4112	21	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	2e-36	TCP domain protein 10