PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016443488.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 816aa    MW: 90888.7 Da    PI: 7.6077
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016443488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.6e-16140186455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  XP_016443488.1 140 VHNLSEKRRRSRINEKLKALQTLIPNS-----NKTDKASMLDEAIEYLKQLQ 186
                     5*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-19133195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-18133193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.898136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.84E-16139190No hitNo description
PfamPF000109.4E-14140186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-18142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.200.204.8E-31335371No hitNo description
SuperFamilySSF561123.24E-79462753IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.204.8E-31469543No hitNo description
SMARTSM002206.1E-36481759IPR000719Protein kinase domain
PROSITE profilePS5001137.418481760IPR000719Protein kinase domain
PfamPF000692.1E-46483749IPR000719Protein kinase domain
PROSITE patternPS001070487509IPR017441Protein kinase, ATP binding site
CDDcd140663.77E-101487753No hitNo description
Gene3DG3DSA:1.10.510.101.0E-44544749No hitNo description
PROSITE patternPS001080603615IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0046777Biological Processprotein autophosphorylation
GO:0005886Cellular Componentplasma membrane
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MADPYRTSPH PHASSSPLES EDMSSFFLNF LQNSSASTSA AAAGFYHRSV PETAADSSSN  60
LNFSDPGRFY AAEFKEGVEN VFASAGLGDS DAMDSANRRE FLEDDKVDNL GFSSEECDGL  120
DMPANQNHSR SSKRSRSAEV HNLSEKRRRS RINEKLKALQ TLIPNSNKTD KASMLDEAIE  180
YLKQLQLQVQ MLTLRNGLSL YPGYVPGSLQ SMQLPSGNEF DGRSFMLSAN GGATLPGNRE  240
MQQTAFEISN QNLSGKPTIT SHNAENSLAL ETTIQNHYGL LNHLASSKLT PILLSRRGKK  300
KEKMSGFLNN ELSKRTSIFG LRLWVILGIC VGAAIVLVLF LISLWFTTKR NNKKTTLSVS  360
AKKNKNPNIP KVSKEIQEIR IDPSRTLPES PKLLPAPVPD PLPEPEEETQ NSSGHHRIHI  420
EIGKGHKIAY PERVGLGGGS SHGSGEVRSV EQAIIAVPEV SHLGWGHWYT LRELEIATNF  480
FADENVIGEG GYGIVYRGVM EDNSNVAVKN LLNNRGQAER EFKVEVEAIG RVRHKNLVRL  540
LGYCAEGAHR MLVYEYVDNG NLEQWIHGDV GPCSPLTWEI RMNIILGTAK GLTYLHEGLE  600
PKVVHRDIKS SNILLDKQWN PKVSDFGLAK LLGAEKSYIT TRVMGTFGYV APEYASTGML  660
NERSDVYSFG ILIMEIISGR NPVDYSRPPG EVTLVDWLKI MVSNRNAEGV LDPKLPEKPS  720
SRALKRVLLV ALRCVDPNAQ KRPKMGHVIH MLEADDFPFR DERRASREHG RLYRDGVKER  780
VMDKRVIESG DSSGYESSVY TNRSFLRKQE TDDEHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3tl8_A4e-7645877118333BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_D4e-7645877118333BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_G4e-7645877118333BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_H4e-7645877118333BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3uim_A2e-7645877110325BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3ulz_A2e-7645877110325BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0138520.0BT013852.1 Lycopersicon esculentum clone 132812F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016443488.10.0PREDICTED: probable serine/threonine-protein kinase At1g01540
SwissprotQ3EDL40.0Y1154_ARATH; Probable serine/threonine-protein kinase At1g01540
TrEMBLA0A1S3XU690.0A0A1S3XU69_TOBAC; probable serine/threonine-protein kinase At1g01540
STRINGXP_009771085.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-35bHLH family protein