PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016443705.1

Common Name

TERN

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 229aa MW: 26352 Da PI: 9.0095

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016443705.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	145	4.2e-45	5	135	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrF Pt+eel+++yL +k+egk+ el++vi+ v iy+++Pw+Lp+ + +++++w+fF++r++++a+g r+ r+t+sgyWkatg+ + v XP_016443705.1 5 SPGFRFYPTEEELISFYLLNKLEGKRPELDRVIPVVTIYNLDPWHLPNlpgeLCMGDTEQWFFFVPRQEREARGGRPCRTTTSGYWKATGSPTYV 99 69*************************999**********9657763334677******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s++++++g+kk++vfykg+ap+g+kt+W m+eyr+ XP_016443705.1 100 YSSESKVIGVKKSMVFYKGKAPTGRKTKWKMNEYRA 135 ********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.02E-49	3	161	IPR003441	NAC domain
PROSITE profile	PS51005	47.774	4	163	IPR003441	NAC domain
Pfam	PF02365	1.3E-23	6	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MVEISPGFRF YPTEEELISF YLLNKLEGKR PELDRVIPVV TIYNLDPWHL PNLPGELCMG 60 DTEQWFFFVP RQEREARGGR PCRTTTSGYW KATGSPTYVY SSESKVIGVK KSMVFYKGKA 120 PTGRKTKWKM NEYRAIEQET STSSSFSIPK LRHEMSLCRV YVISGSFRAF DRRPVATVTR 180 DTAAVKIQEL AGDRDNISSA ISVKNESKSY NIVESDFENL NGWEQINWM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-36	2	161	15	163	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-36	2	161	15	163	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-36	2	161	15	163	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-36	2	161	15	163	NO APICAL MERISTEM PROTEIN
3swm_A	2e-36	2	161	18	166	NAC domain-containing protein 19
3swm_B	2e-36	2	161	18	166	NAC domain-containing protein 19
3swm_C	2e-36	2	161	18	166	NAC domain-containing protein 19
3swm_D	2e-36	2	161	18	166	NAC domain-containing protein 19
3swp_A	2e-36	2	161	18	166	NAC domain-containing protein 19
3swp_B	2e-36	2	161	18	166	NAC domain-containing protein 19
3swp_C	2e-36	2	161	18	166	NAC domain-containing protein 19
3swp_D	2e-36	2	161	18	166	NAC domain-containing protein 19
4dul_A	2e-36	2	161	15	163	NAC domain-containing protein 19
4dul_B	2e-36	2	161	15	163	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB021178	0.0	AB021178.1 Nicotiana tabacum TERN mRNA for NAC-domain protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001311942.1	1e-171	NAC domain-containing protein 90
Refseq	XP_009759500.1	1e-171	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	4e-84	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1U7VCH0	1e-170	A0A1U7VCH0_NICSY; NAC domain-containing protein 90
TrEMBL	Q9SXQ0	1e-170	Q9SXQ0_TOBAC; NAC domain-containing protein 90
STRING	XP_009759500.1	1e-171	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-86	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]