PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016443824.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 433aa MW: 47779.6 Da PI: 7.8446

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016443824.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.6	2.3e-08	348	388	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR++i +++ L++++P K++ a++L +A +Y+k L XP_016443824.1 348 ARQRREKISEKIKILQKMVPGG-----SKMDTASMLDEAANYLKFL 388 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.021	339	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-13	344	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.92E-10	345	393	No hit	No description
SMART	SM00353	7.9E-13	345	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-12	347	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.2E-6	348	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MDTLDWDATP IIRSASYSRK NQQQQMVKNS LMMSNSYLFA PVSSKANALI NPIQQQCHDI 60 GNSSTSSAMV LQEFGAAFDP IHVLSSWKIH QRQEAAARLA ADSVAAKSGT GPSRDCTKMG 120 PSSFLPQNNI MPYFDNNQLA VCGIMANNGL LSKSRSPGCL LSATNTTNYT DTSVEDDGIS 180 MIFSDDSKSL WNTNNDNFAV SSGESAIDAF NSKPIDVNDS NNIECPVNET DQHNNPVRSK 240 RRYNRALLQP DSSTRDSGFQ LISENQPKSK KPRSENKLPS SANINFQQSS SSASSSDHEP 300 DSEAMAQMKE MFYCAAAFRP VSFGEEVEAE KPKRKNVRIS TDPQTVAARQ RREKISEKIK 360 ILQKMVPGGS KMDTASMLDE AANYLKFLRS QIKAMEVFGH KINPLIMTNI SSLSSIPFNY 420 PFPMQPHFPP TIS

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MDTLDWDATP IIRSASYSRK NQQQQMVKNS LMMSNSYLFA PVSSKANALI NPIQQQCHDI  60
GNSSTSSAMV LQEFGAAFDP IHVLSSWKIH QRQEAAARLA ADSVAAKSGT GPSRDCTKMG  120
PSSFLPQNNI MPYFDNNQLA VCGIMANNGL LSKSRSPGCL LSATNTTNYT DTSVEDDGIS  180
MIFSDDSKSL WNTNNDNFAV SSGESAIDAF NSKPIDVNDS NNIECPVNET DQHNNPVRSK  240
RRYNRALLQP DSSTRDSGFQ LISENQPKSK KPRSENKLPS SANINFQQSS SSASSSDHEP  300
DSEAMAQMKE MFYCAAAFRP VSFGEEVEAE KPKRKNVRIS TDPQTVAARQ RREKISEKIK  360
ILQKMVPGGS KMDTASMLDE AANYLKFLRS QIKAMEVFGH KINPLIMTNI SSLSSIPFNY  420
PFPMQPHFPP TIS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016443824.1	0.0	PREDICTED: transcription factor bHLH87-like
Swissprot	Q8S3D2	3e-68	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A1S3XVC1	0.0	A0A1S3XVC1_TOBAC; transcription factor bHLH87-like
STRING	XP_009625228.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4350	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	9e-64	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]