PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016443884.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 541aa MW: 60980.9 Da PI: 4.3893

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016443884.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.5	7.4e-55	10	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv +yL++k++gk+++ i+++diykvePwdLp k ++k+++ ewyfFs dkky +g r+nrat++gyWk+tgkd++v+ XP_016443884.1 10 LAPGFRFHPTDEELVRYYLRRKITGKPIKS-APISDIDIYKVEPWDLPgKsRLKTRDLEWYFFSVLDKKYGNGARTNRATEKGYWKTTGKDRAVH 103 579**********************999.78***********6347777888********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++k+++vg+kktLvf++grapkg++t+Wvmheyrl XP_016443884.1 104 RNKSQVVGMKKTLVFHSGRAPKGQRTNWVMHEYRL 138 *******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-62	9	161	IPR003441	NAC domain
PROSITE profile	PS51005	59.315	10	161	IPR003441	NAC domain
Pfam	PF02365	1.3E-28	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009644	Biological Process	response to high light intensity
GO:0009962	Biological Process	regulation of flavonoid biosynthetic process
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MESRGSLKSL APGFRFHPTD EELVRYYLRR KITGKPIKSA PISDIDIYKV EPWDLPGKSR 60 LKTRDLEWYF FSVLDKKYGN GARTNRATEK GYWKTTGKDR AVHRNKSQVV GMKKTLVFHS 120 GRAPKGQRTN WVMHEYRLID EELDRAGIPQ DAFVVCRVFQ KSGAGPKNGE QYGAPFIEEE 180 WEDDELQVLL KDEAADEFVF DDDIYLDGIE LDQILGTETT LNSAPLPLDY CYGENGSSEE 240 TNNSSDSQNW LQQPDELKPI DLAVQQNVDV DPVMHEYIGE SSKNVNSEDV DYLLNEPTVN 300 ATDDLQFKEE AFLEANDLSN PIEVDSSGFD MLEEYLTFFD ANDDFQNMGF DPSVLFGNDD 360 QISDQALLAE KNIGEVTQQF IAPNEGLGEY KNDFASSSKL ELTKFGSDHQ YPFMKQASKM 420 LSNIHAPPAF ASEFPTKDAT LRLNSLSQSS SSVQVTAGFQ MRDMTVGSNG TGWPLGKHAD 480 YNIFLSFGIS RGSDESAVES FYSIHPGKTT SIISRGWFYY LFFSFLMLCM SFKIGTIICA 540 S

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MESRGSLKSL APGFRFHPTD EELVRYYLRR KITGKPIKSA PISDIDIYKV EPWDLPGKSR  60
LKTRDLEWYF FSVLDKKYGN GARTNRATEK GYWKTTGKDR AVHRNKSQVV GMKKTLVFHS  120
GRAPKGQRTN WVMHEYRLID EELDRAGIPQ DAFVVCRVFQ KSGAGPKNGE QYGAPFIEEE  180
WEDDELQVLL KDEAADEFVF DDDIYLDGIE LDQILGTETT LNSAPLPLDY CYGENGSSEE  240
TNNSSDSQNW LQQPDELKPI DLAVQQNVDV DPVMHEYIGE SSKNVNSEDV DYLLNEPTVN  300
ATDDLQFKEE AFLEANDLSN PIEVDSSGFD MLEEYLTFFD ANDDFQNMGF DPSVLFGNDD  360
QISDQALLAE KNIGEVTQQF IAPNEGLGEY KNDFASSSKL ELTKFGSDHQ YPFMKQASKM  420
LSNIHAPPAF ASEFPTKDAT LRLNSLSQSS SSVQVTAGFQ MRDMTVGSNG TGWPLGKHAD  480
YNIFLSFGIS RGSDESAVES FYSIHPGKTT SIISRGWFYY LFFSFLMLCM SFKIGTIICA  540
S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-45	9	167	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-45	9	167	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-45	9	167	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-45	9	167	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-45	9	167	19	174	NAC domain-containing protein 19
3swm_B	1e-45	9	167	19	174	NAC domain-containing protein 19
3swm_C	1e-45	9	167	19	174	NAC domain-containing protein 19
3swm_D	1e-45	9	167	19	174	NAC domain-containing protein 19
3swp_A	1e-45	9	167	19	174	NAC domain-containing protein 19
3swp_B	1e-45	9	167	19	174	NAC domain-containing protein 19
3swp_C	1e-45	9	167	19	174	NAC domain-containing protein 19
3swp_D	1e-45	9	167	19	174	NAC domain-containing protein 19
4dul_A	1e-45	9	167	16	171	NAC domain-containing protein 19
4dul_B	1e-45	9	167	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00059	PBM	Transfer from AT5G04410	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016443884.1	0.0	PREDICTED: NAC domain-containing protein 53-like
TrEMBL	A0A1S3XVH8	0.0	A0A1S3XVH8_TOBAC; NAC domain-containing protein 53-like
STRING	XP_009599412.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3141	24	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	1e-129	NAC domain containing protein 2