PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016443891.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 256aa MW: 29231.5 Da PI: 8.1284

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016443891.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.5	2.1e-12	89	140	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r +h +Er+RR+++ ++ Lr+llP ++K s ++ +Av+YIk++q XP_016443891.1 89 RIMHRDIERQRRREMSALYSSLRSLLPLqY---VKGKRSVSDHMHEAVNYIKEMQ 140 789***********************66...9*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.27E-9	86	141	No hit	No description
PROSITE profile	PS50888	13.287	87	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.37E-13	88	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-9	89	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-9	89	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0085	93	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MYSLQESDEL MFQIFSNPCQ QSKISQDLVM DYASLETRTH DPLNYINNNS QVNKRLPKRI 60 LGTTDNNIPD KKDETAAAAA TPDDFKLTRI MHRDIERQRR REMSALYSSL RSLLPLQYVK 120 GKRSVSDHMH EAVNYIKEMQ ANMKELEKRR DLLIKSSLPN SIRSNNFTVS PDCVTVSPCL 180 QGGIEILISV DCKAQSFPLS RVLRELLKQG INVVSCVSAK VNQRSLHTIQ IEVCDMNNID 240 HQALQQKVID LINVDL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016443891.1	0.0	PREDICTED: transcription factor bHLH118-like isoform X1
TrEMBL	A0A1S3XVB9	0.0	A0A1S3XVB9_TOBAC; transcription factor bHLH118-like isoform X1
STRING	XP_009624565.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	4e-42	bHLH family protein