PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016444155.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 288aa    MW: 31698 Da    PI: 8.3022
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016444155.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.69.9e-20206240135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  XP_016444155.1 206 CQHCGADKTPQWRAGPLGPKTLCNACGVRYKSGRL 240
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-16200254IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.899200236IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-14203238IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.23E-15203264No hitNo description
CDDcd002025.77E-15205254No hitNo description
PROSITE patternPS003440206231IPR000679Zinc finger, GATA-type
PfamPF003202.4E-17206240IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKMEALDPSA AACFMVDVDD DLLNFSLEDE TVLQDDDEKT TNSITKYKHP FSSSSSSFSS  60
NPVLSLLPSQ QHPECVEEEL EWLSNKDAFP AVEFGILADN PSIVFDHHSP VSVLENSSST  120
CNSSGNGSAN ANAYMSCCAS LKVPVNYPVR ARSKRRRRRR RGSFADLPSE HCMLVNKPSF  180
KIVKQREPLL SLPMNSAKSA CIGRRCQHCG ADKTPQWRAG PLGPKTLCNA CGVRYKSGRL  240
LPEYRPANSP TFSPTVHSNS HRKVLEMRKQ KIGVGGMMIH EACGYSVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151160RSKRRRRRRR
2153158KRRRRR
3154160RRRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1076900.0AB107690.1 Nicotiana tabacum AGP2 mRNA for AG-motif binding protein-2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618081.10.0PREDICTED: GATA transcription factor 1-like isoform X1
RefseqXP_016444155.10.0PREDICTED: GATA transcription factor 1-like isoform X1
TrEMBLA0A1S3XWA20.0A0A1S3XWA2_TOBAC; GATA transcription factor 1-like isoform X1
STRINGXP_009618081.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-45GATA transcription factor 1