PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016444600.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 281aa MW: 32469.9 Da PI: 4.8382

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016444600.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	78.7	1.3e-24	19	141	4	128
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 +F+P+d +l+++ L k v+gk l++ee i +d+y+ ePw+L +++ +k yf ++ +kk++t+ r nr+t +g+W ++ k k++l++ ++ XP_016444600.1 19 SAKFRPSDTDLIMQ-LLKFVAGKCLPTEELIVFADVYSKEPWQLTGDMNS-KKTHYFLTQLKKKKPTDARFNRTTGNGTWTQQNKGKKILDEdDS 111 579*******77.667899999999999**********977655.577899999***************************8556 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +g k++L++ ++ ++ + +W+m ey l XP_016444600.1 112 LIIGYKRSLTYK-HKKDSSLNGRWLMMEYFL 141 669***98.5666669*******76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.681	16	165	IPR003441	NAC domain
Pfam	PF02365	2.6E-11	20	140	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-24	20	164	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
LCAIFLLCLQ ERREPMEKSA KFRPSDTDLI MQLLKFVAGK CLPTEELIVF ADVYSKEPWQ 60 LTGDMNSKKT HYFLTQLKKK KPTDARFNRT TGNGTWTQQN KGKKILDEDD SLIIGYKRSL 120 TYKHKKDSSL NGRWLMMEYF LADYLLQELK SDEAKEFVIC AIKKNPRSEI RGNGIATIVE 180 YKRFIDRVLQ EGVHLQTPSE QSTMILSKLE STSSDVFSMG QLESKDGMLV IINQTDSDEF 240 FGMVNVENQE CYYQEGDEEE VDWESILDFG DHGSVQNDLL Y

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU753265	0.0	EU753265.1 Nicotiana tabacum NAC transcription factor (NAC8) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016444600.1	0.0	PREDICTED: NAC domain-containing protein 30-like, partial
TrEMBL	A0A1S3XXK2	0.0	A0A1S3XXK2_TOBAC; NAC domain-containing protein 30-like
STRING	XP_009631912.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9815	7	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	3e-15	NAC domain containing protein 83