PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016444726.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 217aa    MW: 25431.3 Da    PI: 5.9692
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016444726.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45e-16855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEde+l+ +++ lG ++W++ a+  g++R++k+c++rw +yl
   XP_016444726.1  8 KGPWLEEEDERLASVIAILGERRWDALAKASGLRRSGKSCRLRWMNYL 55
                     79********************************************97 PP
2Myb_DNA-binding48.32.3e-1564106448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       T++E+ l+v++ kq+G++ W++I + ++ gRt++++k++w+++l
   XP_016444726.1  64 ITEDEERLIVQLQKQFGNK-WSKIVKQLP-GRTDNEIKNYWRSHL 106
                      59*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.287355IPR017930Myb domain
SuperFamilySSF466896.36E-276102IPR009057Homeodomain-like
SMARTSM007175.9E-13757IPR001005SANT/Myb domain
PfamPF002492.0E-14855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-20962IPR009057Homeodomain-like
CDDcd001671.73E-81055No hitNo description
PROSITE profilePS5129425.44656110IPR017930Myb domain
SMARTSM007179.5E-1560108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2363109IPR009057Homeodomain-like
PfamPF002492.9E-1364106IPR001005SANT/Myb domain
CDDcd001671.00E-1065106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MQEEKLRKGP WLEEEDERLA SVIAILGERR WDALAKASGL RRSGKSCRLR WMNYLRPNLK  60
HGHITEDEER LIVQLQKQFG NKWSKIVKQL PGRTDNEIKN YWRSHLRKKT MIYEQDCSGS  120
NTSTNSELKS SFGKDDCSSA DSLTDEMEVS NYSIDHSSNE TRLSDWIPSW TYEQSQMEHH  180
MYLCRLNICS CYPQCFSEDN NSSISTWDDT SSSIWEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-2861102105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-27611056159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-27611056159MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-2861102105C-Myb DNA-Binding Domain
1msf_C4e-2861102105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754485e-38HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755215e-38HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016444726.11e-161PREDICTED: transcription factor MYB48-like
TrEMBLA0A1S3XXP81e-159A0A1S3XXP8_TOBAC; transcription factor MYB48-like
STRINGXP_009625011.11e-158(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.12e-55myb domain protein 27