PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016445020.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 629aa    MW: 69815.4 Da    PI: 6.2069
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016445020.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.53.5e-24226279155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k++++Wt+ LH++F+ea++ + G +kA+Pk+il+ mkv+gLt+e+v+SHLQkYR+
  XP_016445020.1 226 KAKVVWTNSLHNKFLEAIRDI-GFDKAVPKKILDQMKVPGLTRENVASHLQKYRI 279
                     6799*****************.********************************6 PP
2Response_reg71.82.9e-24361441109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +l+vdD+ + +++++ +l+k +y +v +++++ +al +l+ k   +Dl+++D+ mp+m+G+el + i++e  +lp+++++a ++e ++l+ l+ G
  XP_016445020.1  36 ILVVDDDVVCLSIVAMILKKCKY-QVVTVKHPMDALSILRIKGgsFDLVVVDVHMPDMNGFELQQVITNEF-ELPVVLMSADDKEGTILKGLDGG 128
                     89*********************.9999***********666666**********************9999.9********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a  fl+Kp++ ++l++
  XP_016445020.1 129 AAFFLVKPISVDDLRD 144
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.1E-3233157No hitNo description
SuperFamilySSF521721.57E-3033150IPR011006CheY-like superfamily
SMARTSM004483.8E-2534146IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.38935150IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2036144IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.62E-2337150No hitNo description
PROSITE profilePS5129410.567223282IPR017930Myb domain
SuperFamilySSF466891.97E-17224283IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-24225283IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-24226279IPR006447Myb domain, plants
PfamPF002495.7E-6229278IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MEGLLALAWK FGLQCLLHFQ KSRGSSGRRR HTSISILVVD DDVVCLSIVA MILKKCKYQV  60
VTVKHPMDAL SILRIKGGSF DLVVVDVHMP DMNGFELQQV ITNEFELPVV LMSADDKEGT  120
ILKGLDGGAA FFLVKPISVD DLRDLWQYAL LQKKKGKRVV LEEIDCLEKS SNCNKKSLHE  180
VGESVSSINE NCYQHIKKEK SKRKSARTQR NADKDNSGNS AAPFKKAKVV WTNSLHNKFL  240
EAIRDIGFDK AVPKKILDQM KVPGLTRENV ASHLQKYRIF LERVSDACCR IQAADTSLGM  300
LSQEKFGLQK QFSENTTNPR SLIHTANNGS SSFRTQQTRQ TIPSGYEQAQ LFLNEDNLGN  360
ITHSNENPLY KANQLPSTMK AKNYQTGSSA YEDISSQLMN GTTSTQVRRM LSGNPANRLS  420
GRNLLALGTN GITMHATLNG NLNFLRDGFA DDQCGTNFTQ NNDADEASTL FTGHMNVIGK  480
SQHDSEQCLA QEASSSDGFD GEKQCSAILS DHIDEETYMQ LPSFVNGVCR GQEVDAMLDP  540
VCNFSEFHNT NATQQSRGIG DLSVSFVNQG NVLPHQQQDH IGHTEPAEDG MSQLHNVFSY  600
PTEQCKDEEF LELVLASSPY EDDQNPDGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19225285464ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494881e-34AC149488.1 Solanum demissum chromosome 11 clone PGEC542, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016445020.10.0PREDICTED: two-component response regulator ORR24-like isoform X2
TrEMBLA0A1S3XYP60.0A0A1S3XYP6_TOBAC; two-component response regulator ORR24-like isoform X2
STRINGXP_009603673.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-51response regulator 2