PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016445021.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 606aa    MW: 67234.4 Da    PI: 5.3798
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016445021.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.63.3e-24203256155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k++++Wt+ LH++F+ea++ + G +kA+Pk+il+ mkv+gLt+e+v+SHLQkYR+
  XP_016445021.1 203 KAKVVWTNSLHNKFLEAIRDI-GFDKAVPKKILDQMKVPGLTRENVASHLQKYRI 256
                     6799*****************.********************************6 PP
2Response_reg71.82.7e-24131211109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +l+vdD+ + +++++ +l+k +y +v +++++ +al +l+ k   +Dl+++D+ mp+m+G+el + i++e  +lp+++++a ++e ++l+ l+ G
  XP_016445021.1  13 ILVVDDDVVCLSIVAMILKKCKY-QVVTVKHPMDALSILRIKGgsFDLVVVDVHMPDMNGFELQQVITNEF-ELPVVLMSADDKEGTILKGLDGG 105
                     89*********************.9999***********666666**********************9999.9********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a  fl+Kp++ ++l++
  XP_016445021.1 106 AAFFLVKPISVDDLRD 121
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.6E-3210134No hitNo description
SuperFamilySSF521721.57E-3010127IPR011006CheY-like superfamily
SMARTSM004483.8E-2511123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.38912127IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2013121IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.26E-2314127No hitNo description
PROSITE profilePS5129410.567200259IPR017930Myb domain
SuperFamilySSF466891.79E-17201260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-24202260IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-24203256IPR006447Myb domain, plants
PfamPF002495.4E-6206255IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MEVETLINRS ISILVVDDDV VCLSIVAMIL KKCKYQVVTV KHPMDALSIL RIKGGSFDLV  60
VVDVHMPDMN GFELQQVITN EFELPVVLMS ADDKEGTILK GLDGGAAFFL VKPISVDDLR  120
DLWQYALLQK KKGKRVVLEE IDCLEKSSNC NKKSLHEVGE SVSSINENCY QHIKKEKSKR  180
KSARTQRNAD KDNSGNSAAP FKKAKVVWTN SLHNKFLEAI RDIGFDKAVP KKILDQMKVP  240
GLTRENVASH LQKYRIFLER VSDACCRIQA ADTSLGMLSQ EKFGLQKQFS ENTTNPRSLI  300
HTANNGSSSF RTQQTRQTIP SGYEQAQLFL NEDNLGNITH SNENPLYKAN QLPSTMKAKN  360
YQTGSSAYED ISSQLMNGTT STQVRRMLSG NPANRLSGRN LLALGTNGIT MHATLNGNLN  420
FLRDGFADDQ CGTNFTQNND ADEASTLFTG HMNVIGKSQH DSEQCLAQEA SSSDGFDGEK  480
QCSAILSDHI DEETYMQLPS FVNGVCRGQE VDAMLDPVCN FSEFHNTNAT QQSRGIGDLS  540
VSFVNQGNVL PHQQQDHIGH TEPAEDGMSQ LHNVFSYPTE QCKDEEFLEL VLASSPYEDD  600
QNPDGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19202262464ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494881e-34AC149488.1 Solanum demissum chromosome 11 clone PGEC542, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016445017.10.0PREDICTED: putative two-component response regulator-like APRR6 isoform X1
RefseqXP_016445018.10.0PREDICTED: putative two-component response regulator-like APRR6 isoform X1
RefseqXP_016445019.10.0PREDICTED: putative two-component response regulator-like APRR6 isoform X1
TrEMBLA0A1S3XZ880.0A0A1S3XZ88_TOBAC; putative two-component response regulator-like APRR6 isoform X1
STRINGXP_009603673.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-51response regulator 2