PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016445022.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 563aa    MW: 62408.5 Da    PI: 5.2637
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016445022.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.73e-24160213155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k++++Wt+ LH++F+ea++ + G +kA+Pk+il+ mkv+gLt+e+v+SHLQkYR+
  XP_016445022.1 160 KAKVVWTNSLHNKFLEAIRDI-GFDKAVPKKILDQMKVPGLTRENVASHLQKYRI 213
                     6799*****************.********************************6 PP
2Response_reg47.69.1e-17107840109
                     HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
    Response_reg  40 kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                     k   +Dl+++D+ mp+m+G+el + i++e  +lp+++++a ++e ++l+ l+ Ga  fl+Kp++ ++l++
  XP_016445022.1  10 KGGSFDLVVVDVHMPDMNGFELQQVITNEF-ELPVVLMSADDKEGTILKGLDGGAAFFLVKPISVDDLRD 78 
                     55669*********************9999.9***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011026.79184IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.90E-16684No hitNo description
SuperFamilySSF521721.85E-19984IPR011006CheY-like superfamily
PfamPF000723.0E-13978IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23003.4E-201091No hitNo description
PROSITE profilePS5129410.567157216IPR017930Myb domain
SuperFamilySSF466898.15E-18158217IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-24159217IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-24160213IPR006447Myb domain, plants
PfamPF002494.9E-6163212IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MDALSILRIK GGSFDLVVVD VHMPDMNGFE LQQVITNEFE LPVVLMSADD KEGTILKGLD  60
GGAAFFLVKP ISVDDLRDLW QYALLQKKKG KRVVLEEIDC LEKSSNCNKK SLHEVGESVS  120
SINENCYQHI KKEKSKRKSA RTQRNADKDN SGNSAAPFKK AKVVWTNSLH NKFLEAIRDI  180
GFDKAVPKKI LDQMKVPGLT RENVASHLQK YRIFLERVSD ACCRIQAADT SLGMLSQEKF  240
GLQKQFSENT TNPRSLIHTA NNGSSSFRTQ QTRQTIPSGY EQAQLFLNED NLGNITHSNE  300
NPLYKANQLP STMKAKNYQT GSSAYEDISS QLMNGTTSTQ VRRMLSGNPA NRLSGRNLLA  360
LGTNGITMHA TLNGNLNFLR DGFADDQCGT NFTQNNDADE ASTLFTGHMN VIGKSQHDSE  420
QCLAQEASSS DGFDGEKQCS AILSDHIDEE TYMQLPSFVN GVCRGQEVDA MLDPVCNFSE  480
FHNTNATQQS RGIGDLSVSF VNQGNVLPHQ QQDHIGHTEP AEDGMSQLHN VFSYPTEQCK  540
DEEFLELVLA SSPYEDDQNP DGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-19159219464ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016445021.10.0PREDICTED: two-component response regulator ORR24-like isoform X3
TrEMBLA0A1S3XYK00.0A0A1S3XYK0_TOBAC; two-component response regulator ORR24-like isoform X3
STRINGXP_009603673.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-49response regulator 2