PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016445464.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 242aa    MW: 27399.3 Da    PI: 4.7317
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016445464.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-19138188255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ tae+Aa a+++a+ +++g
  XP_016445464.1 138 RYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAALAYDKAAYRIRG 188
                     6********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.9E-38138202IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-31138196IPR001471AP2/ERF domain
CDDcd000181.35E-31138196No hitNo description
PROSITE profilePS5103224.46138196IPR001471AP2/ERF domain
PfamPF008473.7E-13138188IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23138198IPR016177DNA-binding domain
PRINTSPR003679.7E-11139150IPR001471AP2/ERF domain
PRINTSPR003679.7E-11162178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MMFENSEFIT NFELLESIKQ HLLEDWSSPE NSTSLYSTET QIFPNLFSDN WENIPINEND  60
TENRYIYSNA ITSAVKIEPE FPNFLENDTE NMYIYDNAIN EPTQSAVKTE PEVSVSSPEM  120
YNFKAPAAVP PPAKKSERYR GVRQRPWGKF AAEIRDPAKN GARVWLGTYE TAEDAALAYD  180
KAAYRIRGSR ALLNFPLRVN SGEPEPVRVG SKRSSLSPES SSSSSSENVS TKRTKKVAQL  240
YN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-39135203270ATERF1
3gcc_A5e-39135203270ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016445464.11e-176PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A1S3Y0261e-175A0A1S3Y026_TOBAC; ethylene-responsive transcription factor 2-like
STRINGXP_009611402.11e-173(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.12e-43ethylene responsive element binding factor 2