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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_016445819.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | NAC | ||||||||
| Protein Properties | Length: 361aa MW: 41041.2 Da PI: 9.1605 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 163.7 | 6.9e-51 | 14 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
lppGfrF Ptdeel+v+yL+kkv+g+++++ ++i ++d+yk++Pw Lp+ k+ +ekewyfFs+rd+ky++g+r+nr++ +gyWkatg+
XP_016445819.1 14 LPPGFRFYPTDEELLVQYLCKKVAGHDFSM-QIIGDIDLYKFDPWVLPNfllictgKALFGEKEWYFFSPRDRKYPNGSRPNRVAGTGYWKATGT 107
79****************************.89***************668887654445999******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
dk ++s +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
XP_016445819.1 108 DKVITS-QGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 146
*****9.9999***************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 2.75E-64 | 10 | 169 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 59.171 | 14 | 169 | IPR003441 | NAC domain |
| Pfam | PF02365 | 1.2E-25 | 15 | 146 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 361 aa Download sequence Send to blast |
MGVQEKDPLL QLSLPPGFRF YPTDEELLVQ YLCKKVAGHD FSMQIIGDID LYKFDPWVLP 60 NFLLICTGKA LFGEKEWYFF SPRDRKYPNG SRPNRVAGTG YWKATGTDKV ITSQGRKVGI 120 KKALVFYVGK APKGTKTNWI MHEYRLFEPS RKNGSTKLDE WVLCRIYKKN SSGQKPHMSG 180 LNSKEYSHGS STSSSSQFDD MLDSLPEMDH KFSNLPRLNS LKNFQQGEKF NLERLDSANF 240 DWAILAGLKP MPELGPANQA PGVQPQPQGH VNNHIHNHNN NNNYMNFLND GYVQPTNIRG 300 NAKVERVNLD EEVESGIRNQ GIDKSGFFQQ NINGFSQTYT NTVDQFGIQC PNQTLNLGFR 360 Q |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1ut4_A | 1e-108 | 1 | 175 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-108 | 1 | 175 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-108 | 1 | 175 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-108 | 1 | 175 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-108 | 1 | 175 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-108 | 1 | 175 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-108 | 1 | 175 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-108 | 1 | 175 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-108 | 1 | 175 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-108 | 1 | 175 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-108 | 1 | 175 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-108 | 1 | 175 | 7 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 1e-108 | 1 | 175 | 4 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-108 | 1 | 175 | 4 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269|PubMed:25005917}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269|PubMed:25005917}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016445819.1 | 0.0 | PREDICTED: NAC domain-containing protein 72-like isoform X1 | ||||
| Swissprot | Q9SQL0 | 0.0 | JA2_SOLLC; NAC domain-containing protein JA2 | ||||
| TrEMBL | A0A1S3Y111 | 0.0 | A0A1S3Y111_TOBAC; NAC domain-containing protein 72-like isoform X1 | ||||
| STRING | XP_009783061.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA3122 | 24 | 52 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G27410.2 | 1e-124 | NAC family protein | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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