PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016446080.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 312aa    MW: 33678 Da    PI: 6.6274
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016446080.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.62.2e-15225260134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cg ++  Tp++Rrgp g+++LCnaCGl ++ kg
  XP_016446080.1 225 CRHCGISSkfTPMMRRGPAGPRSLCNACGLTWANKG 260
                     *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.3E-989124IPR010399Tify domain
PROSITE profilePS5132012.93389124IPR010399Tify domain
PfamPF062002.8E-1192122IPR010399Tify domain
PfamPF062033.3E-16156198IPR010402CCT domain
PROSITE profilePS5101713.245156198IPR010402CCT domain
PROSITE profilePS501148.866219276IPR000679Zinc finger, GATA-type
SMARTSM004013.2E-9219272IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-11221274No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14223266IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.48E-13224267No hitNo description
PROSITE patternPS003440225252IPR000679Zinc finger, GATA-type
PfamPF003201.5E-13225260IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MYRRETMNGT VQQERHQQTH FAEGKDDNDD VDVAGGGGGE SIDDPSHHIR YDHNYHHALH  60
NGGAGATIEE AAALNVVEGV AHNALYVPGV GSSNQLTLSF RGQVFVYPDV SPEKVHAVML  120
LLDGYEVPTG TAAVNVASQS HWASSEGPGR LNQPQRAASL SRFREKRKER CFDKKIRYTV  180
RKEVALRMQR KKGQFTSSKS ISDEAGSSSA EGNAGSSQEE PETSCRHCGI SSKFTPMMRR  240
GPAGPRSLCN ACGLTWANKG ILRDLSKVST TGAQDHTVKS SEQSNDEANG SDAMAAAGII  300
TSDDENTVLP HE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612270.0GQ261227.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI008 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616899.10.0PREDICTED: GATA transcription factor 24-like
RefseqXP_016446080.10.0PREDICTED: GATA transcription factor 24-like
SwissprotQ8H1G06e-73GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A1S3Y1U50.0A0A1S3Y1U5_TOBAC; GATA transcription factor 24-like
STRINGXP_009616899.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-67ZIM-like 1