PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016446189.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 159aa    MW: 18531.7 Da    PI: 9.7464
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016446189.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.82.8e-1322501442
                    HHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF 14 skRrngilKKAeELSvLCdaevaviifss 42
                     kR + ++K AeELSvLC++++a+iifs+
  XP_016446189.1 22 LKRTTSLFKQAEELSVLCAIQIAIIIFSP 50
                    69**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.297149IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-6160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-131393IPR002100Transcription factor, MADS-box
PfamPF003191.1E-101450IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MASKKHKNSS EMSESEKKSL ILKRTTSLFK QAEELSVLCA IQIAIIIFSP WETSPIYWPS  60
EAQATEIFKN YLKKPEVVRT KKLIKLETYL SEKEKAKEED IRKMEQKNEE MEMEFLFSEL  120
VKGKSMNELD VRQTKGLLKL AALKKAKLEE MKKQLAEQN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771864.11e-108PREDICTED: agamous-like MADS-box protein AGL90
RefseqXP_016446189.11e-108PREDICTED: agamous-like MADS-box protein AGL90
TrEMBLA0A1S3Y2271e-107A0A1S3Y227_TOBAC; agamous-like MADS-box protein AGL90
TrEMBLA0A1U7WB261e-107A0A1U7WB26_NICSY; agamous-like MADS-box protein AGL90
STRINGXP_009771864.11e-108(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.14e-15AGAMOUS-like 36