PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016446538.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 271aa    MW: 31302.1 Da    PI: 6.4151
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016446538.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.7e-08158198954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  XP_016446538.1 158 ARLRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 198
                     699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-15154216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-12155212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-12155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-10155203No hitNo description
PfamPF000108.1E-6159198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDINHHLKLT TSTWQPTMAN IDDHIFDDHH HHHQQQQLQQ RQFPFDQNPI WPSFPLQNPH  60
HHLPSFSSEL QQQQQQRQQQ QVPFDHAVNN HVQTLIEDHH DQEPEDDEEE EEEEELGAMK  120
EMMFKIAAMQ PVDIDPATIR KPKRRNVRIS NDPQSVAARL RRERISEKIR ILQRLVPGGT  180
KMDTASMLDE AIRYVKFLKR QIRQLQLPNH HLPPSHVPTV PCPSTENWAN IITPTKALIL  240
GSSSITTTTI ATATTFVGNN ASDPTYEVIG N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016446538.10.0PREDICTED: transcription factor HEC3-like
TrEMBLA0A1S3Y2V40.0A0A1S3Y2V4_TOBAC; transcription factor HEC3-like
STRINGXP_009623949.11e-150(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-45bHLH family protein