PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016446640.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 493aa    MW: 54861.6 Da    PI: 6.7644
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016446640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.3e-1831121199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+   d   s+ l++p  fa+  ++ +  ++   led+sg++W+v +  r ++g+  +++GW  F +++gLk gDf+vF++++++ f  vv+
  XP_016446640.1  31 FFKVM--IDKRFSKVLYFPPGFARLVSHLT--NQATYLEDSSGQKWKVGI--RIHKGSLAIREGWHAFSSEHGLKMGDFLVFHYIQEQHF--VVQ 117
                     88999..78888888********8886554..4479**************..999999***************************98888..*** PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f +
  XP_016446640.1 118 IFGT 121
                     9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.60629122IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-2229124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-2129124IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-1930119No hitNo description
SMARTSM010196.7E-1631122IPR003340B3 DNA binding domain
PfamPF023629.4E-1631120IPR003340B3 DNA binding domain
SMARTSM010190.18390483IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-10393482IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-7401481IPR003340B3 DNA binding domain
SuperFamilySSF1019361.06E-10402485IPR015300DNA-binding pseudobarrel domain
CDDcd100174.22E-8419481No hitNo description
PROSITE profilePS508638.825422485IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MVHQNEACEK CTQTCLLIHG QRDPSHIVNS FFKVMIDKRF SKVLYFPPGF ARLVSHLTNQ  60
ATYLEDSSGQ KWKVGIRIHK GSLAIREGWH AFSSEHGLKM GDFLVFHYIQ EQHFVVQIFG  120
TSGCQKISFD NGTSTGKKRR RTNCKATSQD ELLPEIDINS RKKWNSTPSD TAVPESEMAD  180
HEPATTTFAS NIDADTGILE IVPEAEAISD ILQGENGPGN HVSTNSISQR ESSSVDEVPV  240
EMEFLTFKEP VHFLDIGITQ TEKISEPVND ILLLGQKDEN VHNMGLISSM SSAENGGKGS  300
HLVLPSNKES RCSNQVTREK SNEASHIDKQ ERKEMAAKTH FSAKKLNGKE PNITEKDGQS  360
FPKAVSGNNK VTKSEPADSG DASFPDAGSF SCLLRADGRN FLELPQSWPQ VLTGRKKLEH  420
ITIFLQGPDD RPWPVTYHER AGSKVLASRW AEFTAVYGIK PGDECRFQLL NLSERRFTVH  480
IAHKLDVTQA TLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016446640.10.0PREDICTED: B3 domain-containing protein Os01g0905400-like
TrEMBLA0A1S3Y3C90.0A0A1S3Y3C9_TOBAC; B3 domain-containing protein Os01g0905400-like
STRINGXP_009627552.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.17e-14B3 family protein