PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016446700.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 240aa MW: 26351.9 Da PI: 7.8256

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016446700.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.8e-12	56	102	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr l+P++ K++Ka+ L +++ +k+L XP_016446700.1 56 KSHSEAERRRRERINAHLATLRNLVPSS-----DKMDKAALLAEVICQVKQL 102 58***********************8.....7********99999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.11	53	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-13	56	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-13	56	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.7E-10	56	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-11	59	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	9.3E-6	141	184	No hit	No description
CDD	cd04873	6.52E-7	141	199	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MNCQISGNLG GFYENEANGV PQNLVLDSEK GELVKASGRV GKKTGKSEGK SIAALKSHSE 60 AERRRRERIN AHLATLRNLV PSSDKMDKAA LLAEVICQVK QLKETASHVS ESFFIPLDSD 120 EIRVETIAEN AGDGTCLFKA SICCEYRPEL LSDLRQVINS LNVNLVKSEI STLGSRVKNI 180 FVFTNVIDGG HANIEAREIL LTSARHAFSS VLDKVSAFPE YSTYSNKRQR ISCFDTSSLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	66	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016446700.1	1e-176	PREDICTED: transcription factor bHLH30-like
TrEMBL	A0A1S3Y3J0	1e-175	A0A1S3Y3J0_TOBAC; transcription factor bHLH30-like
STRING	XP_009624214.1	1e-174	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6730	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	4e-37	bHLH family protein