PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016446996.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 168aa    MW: 19257.2 Da    PI: 6.1228
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016446996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30105163159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYG+K+vk+s++pr+YYrC+ ++Cpvkk+ver++ed ++v++tYeg Hnh+
  XP_016446996.1 105 LDDGYKWRKYGKKMVKDSPNPRNYYRCSIESCPVKKRVERDKEDCRYVITTYEGVHNHQ 163
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-3291165IPR003657WRKY domain
SuperFamilySSF1182901.15E-2798165IPR003657WRKY domain
PROSITE profilePS5081130.389100165IPR003657WRKY domain
SMARTSM007742.5E-33105164IPR003657WRKY domain
PfamPF031068.2E-23106163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MAANNPSANM SDGSFRSLDS PDSDFSNQLI NFELSDIFEL DNWPVHDDPT FVVSGPSQYS  60
GNEVVVTERS RSYHEGSSNN IGSSRERKEV KDKVAFKTLS QIEILDDGYK WRKYGKKMVK  120
DSPNPRNYYR CSIESCPVKK RVERDKEDCR YVITTYEGVH NHQGPSQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-2495166778Probable WRKY transcription factor 4
2lex_A4e-2495166778Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8712810.0AJ871281.1 Nicotiana tabacum mRNA for putative WRKY transcription factor 11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594857.11e-124PREDICTED: probable WRKY transcription factor 50
RefseqXP_016446996.11e-124PREDICTED: probable WRKY transcription factor 50
RefseqXP_016456538.11e-124PREDICTED: probable WRKY transcription factor 50
TrEMBLQ5ND891e-122Q5ND89_TOBAC; Putative WRKY transcription factor 11
STRINGXP_009594857.11e-123(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-38WRKY DNA-binding protein 50