PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016447278.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 142aa MW: 16248 Da PI: 4.8629

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016447278.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.7	5.4e-08	24	68	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ E + + +a + + ++ +W ++a++++ g+t +++ + XP_016447278.1 24 KWTPAENKAFENALAFFDKDtpdRWQRVAEMVP-GKTVVDVIRQYK 68 8******************************.****998886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.1E-9	21	73	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.54E-12	23	78	IPR009057	Homeodomain-like
CDD	cd00167	7.34E-7	24	70	No hit	No description
Pfam	PF00249	8.2E-7	24	69	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MEILSPAPYL SNSSWFLDEE KSTKWTPAEN KAFENALAFF DKDTPDRWQR VAEMVPGKTV 60 VDVIRQYKEL EDDVSRIEAG LITIPGYTTT SSSPFTLEWG NSHSSFDGYK QSYVVGGKRS 120 LSNRPPEQER KKGIPWTEEE HK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	9e-17	25	98	11	84	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	1e-142	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009603384.1	1e-101	PREDICTED: transcription factor DIVARICATA-like
Refseq	XP_009603385.1	1e-101	PREDICTED: transcription factor DIVARICATA-like
Refseq	XP_016432478.1	1e-101	PREDICTED: transcription factor DIVARICATA-like
Refseq	XP_016447278.1	1e-102	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	2e-65	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A1S3WXT5	2e-99	A0A1S3WXT5_TOBAC; transcription factor DIVARICATA-like
TrEMBL	A0A1S3Y4W5	1e-100	A0A1S3Y4W5_TOBAC; transcription factor DIVARICATA-like
STRING	XP_009603384.1	1e-100	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA458	24	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	7e-58	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]