PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016447355.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 190aa MW: 21227.6 Da PI: 4.7025

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016447355.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.4	1.6e-12	16	60	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +rien r++tfskRr g+ KKA+ L C++++ + +fs+ g+ XP_016447355.1 16 ERIENPEDRYTTFSKRRSGLYKKANNLVEECGVDIGIALFSPAGN 60 69****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.6E-14	8	67	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	19.273	8	68	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-17	9	76	IPR002100	Transcription factor, MADS-box
CDD	cd00120	1.24E-20	9	67	No hit	No description
PRINTS	PR00404	1.3E-10	10	30	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.0E-18	17	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-10	30	45	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-10	45	66	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MDKEKKTAGR QSIPMERIEN PEDRYTTFSK RRSGLYKKAN NLVEECGVDI GIALFSPAGN 60 PFSFFHPTPN LILDPVENPN IELSESTKLV AAYARNNVNQ TNSRINEIET IEEGVKSQML 120 LLEQLNKTRQ IDSYKCIDQF KADDIIKYEA WLQSVVFGLE NHLKQLGNGA SSSSEAPSDN 180 ADNSPSASNE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016447355.1	1e-139	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A1S3Y5J9	1e-138	A0A1S3Y5J9_TOBAC; agamous-like MADS-box protein AGL61
STRING	XP_009595185.1	1e-138	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA382	20	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	7e-23	AGAMOUS-like 57