PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016447560.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 230aa MW: 23770.2 Da PI: 7.1779

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016447560.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.2	4.3e-39	25	83	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++l+cprCdstntkfCyynny+lsqPr+fCk+CrryWt+GG+lrn+PvGgg+rkn ++ XP_016447560.1 25 PENLPCPRCDSTNTKFCYYNNYNLSQPRHFCKSCRRYWTRGGTLRNIPVGGGTRKNSSH 83 57899**************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	24	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-33	27	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.488	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MSSEVGDRRP ARLPAPANGT RPSEPENLPC PRCDSTNTKF CYYNNYNLSQ PRHFCKSCRR 60 YWTRGGTLRN IPVGGGTRKN SSHKRPRNTT SVTAQESVNA TPITMIGSGQ SSGSGSVSFM 120 GCEVNLNESV QEAGGATNGT FTSLLTGPVG GGFVPLGGFG LGLGGFGLGN LDWPMEQVGG 180 GNGGGGDGGE NMKWQLSSGE IEGGGGGIGE DDCFGNWPDL AISAPGTSLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009592897.1	1e-165	PREDICTED: dof zinc finger protein DOF3.4-like
Refseq	XP_016447560.1	1e-165	PREDICTED: dof zinc finger protein DOF3.4-like
TrEMBL	A0A1S3Y655	1e-164	A0A1S3Y655_TOBAC; dof zinc finger protein DOF3.4-like
STRING	XP_009592897.1	1e-165	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	8e-34	Dof family protein