PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016447779.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 203aa MW: 22473.6 Da PI: 4.7731

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016447779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.2e-05	33	55	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H XP_016447779.1 33 YTCTFCRREFRSAQALGGHMNVH 55 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.15E-6	30	59	No hit	No description
PROSITE profile	PS50157	11.157	33	60	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.4E-5	33	56	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0066	33	55	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	35	55	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MWKPKDDDDS WEIRAFEEDT SNSMGATWPP RSYTCTFCRR EFRSAQALGG HMNVHRRDRA 60 KLNQTPLASN SSTTFPNANS TLLIQTPEFI TNGGLCLLYS LPNNPNTIFN PSTVNSSVDP 120 STLLTIPPSF MNNLMSSCTP PSLNFPINQP QNINSSSNTS ETSASNGTSN DNNHYDGSSK 180 RDSVIEDEID LELRLGWRSS SSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	1e-13	28	55	2	29	superman protein
2l1o_A	1e-13	28	55	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009774368.1	1e-147	PREDICTED: transcriptional regulator SUPERMAN-like
Refseq	XP_016447779.1	1e-147	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	A0A1S3Y6W3	1e-145	A0A1S3Y6W3_TOBAC; transcriptional regulator SUPERMAN-like
TrEMBL	A0A1U7W6X3	1e-145	A0A1U7W6X3_NICSY; transcriptional regulator SUPERMAN-like
STRING	XP_009774368.1	1e-146	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5953	21	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	1e-31	C2H2 family protein