PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016447833.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 261aa    MW: 30264.3 Da    PI: 9.2766
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016447833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-082341648
                     HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +k+ G g+W++ ++  g+ R++k+c++rw +yl
   XP_016447833.1  2 IKENGEGQWRSLPKNAGLLRCGKSCRLRWMNYL 34
                     7999*************99************97 PP
2Myb_DNA-binding543.7e-174085148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+++++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
   XP_016447833.1 40 RGNFSQDEEDLILRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 85
                     89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001670.00404134No hitNo description
SMARTSM0071730136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-14141IPR009057Homeodomain-like
PROSITE profilePS5129410.611134IPR017930Myb domain
PfamPF002498.5E-7234IPR001005SANT/Myb domain
SuperFamilySSF466894.6E-21281IPR009057Homeodomain-like
PROSITE profilePS5129425.8793589IPR017930Myb domain
SMARTSM007174.0E-163987IPR001005SANT/Myb domain
PfamPF002498.4E-164085IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-264290IPR009057Homeodomain-like
CDDcd001677.16E-114285No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
YIKENGEGQW RSLPKNAGLL RCGKSCRLRW MNYLRPGIKR GNFSQDEEDL ILRLHSLLGN  60
RWSLIAGRLP GRTDNEIKNY WNTHLIKKLK SAGIEPKPHK KFSKCSKKES RKGPQQEKSR  120
KKQGKKSNNK NNEGQIVQVE KIQVFTPKPI RISSEVLSRN NSFENVTLST NCSSNSNFEE  180
ADVDIKETEL KLEEVSFFPR DLDFGKLLEG DANLDEFLIQ ESSYISNKYS VPMNESMLEK  240
VYEEYLLLLS ENCYLQDDHQ K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-2029122110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016447833.10.0PREDICTED: myb-related protein 330-like, partial
TrEMBLA0A1S3Y6J30.0A0A1S3Y6J3_TOBAC; myb-related protein 330-like
STRINGXP_009602702.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.16e-54myb domain protein 5