PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016447974.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 162aa    MW: 18562.5 Da    PI: 9.7629
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016447974.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.7e-1874157593
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      +++++l+++ l++p +fa++hg+  ++  t++++d + rsW+++l    +++ +++++GW+eF+ an LkegD v+F  +  +++++ 
  XP_016447974.1  74 SMKPYYLSKRFLRVPCPFAQQHGLRDRK-CTIMIRD-EQRSWTFTL--YSCGRFTYIGGGWREFCVANCLKEGDRVMFGIVA-NGEKPI 157
                     56889999999***********999765.5999999.779******..999999************************9776.444455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-2066160IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1967160IPR015300DNA-binding pseudobarrel domain
CDDcd100174.92E-1569147No hitNo description
PROSITE profilePS5086311.23770162IPR003340B3 DNA binding domain
SMARTSM010196.6E-1071162IPR003340B3 DNA binding domain
PfamPF023622.2E-1574159IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MFGIVANGEK PILKFHDLRE NALLRPEGKK TNSDTERVST QEKPKSNVIS SREAVPNVEA  60
AKDMHLGHPH FICSMKPYYL SKRFLRVPCP FAQQHGLRDR KCTIMIRDEQ RSWTFTLYSC  120
GRFTYIGGGW REFCVANCLK EGDRVMFGIV ANGEKPILKF HG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016447974.11e-121PREDICTED: B3 domain-containing protein REM2-like isoform X1
TrEMBLA0A1S3Y7R91e-119A0A1S3Y7R9_TOBAC; B3 domain-containing protein REM2-like isoform X1
STRINGXP_009597618.11e-114(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31615.16e-14B3 family protein