PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016448153.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 173aa MW: 20038.5 Da PI: 10.0618

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016448153.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.6	1.4e-12	22	50	14	42
HHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifss 42 kR ++K A+ELS+LC++++a+i+fs+ XP_016448153.1 22 LKRTRSLFKQAKELSILCAIQIAIIVFSP 50 69**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	4.45E-13	1	78	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.8E-5	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.003	1	49	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-10	14	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MAGKKHKNSS KMSESEKKAL ILKRTRSLFK QAKELSILCA IQIAIIVFSP WETSPIYWPS 60 EAQATEIFKN YLKKPEVVRM KKLIKLETYL SEKEKAKEED IRKMEQKNDE MEMEFLFCEL 120 IKGKSMNELD VRQTKGLLKL AALKKAKLEE MKKQLAEQND QPKQGNDNAA GAW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009615159.2	1e-122	PREDICTED: agamous-like MADS-box protein AGL90
Refseq	XP_016448153.1	1e-122	PREDICTED: agamous-like MADS-box protein AGL90
TrEMBL	A0A1S3Y7K0	1e-120	A0A1S3Y7K0_TOBAC; agamous-like MADS-box protein AGL90
STRING	XP_009615159.1	1e-112	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26650.1	7e-16	AGAMOUS-like 36