PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448229.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 581aa    MW: 66525.8 Da    PI: 5.8713
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448229.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-11321363754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      +Er+RR+++N+++  Lr l+Pk +      Kl+ a+iL  A+eY+ +L
  XP_016448229.1 321 VAERKRRKKLNERLYALRALVPKiS------KLDRASILGDAIEYVMEL 363
                     68*********************66......**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.1E-206156IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.586314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-11316368No hitNo description
SuperFamilySSF474597.07E-16317377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-15320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9321364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15321377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MELMHLMERL RPIMGLKNWD YCVLWKLSED QRFLEWICCC CGGAEQNMHS CEQEILFPDS  60
STSPCRDVMF QHPRTTACDL LAQLPSSLAL DSGIYAQALL SNQAKWLNFV PFSESNMSNL  120
QETIGTRVLI PSPLGLLELF SAKQLPEDEK VIEFISAQCN IHLEQHKFPS NGDDNTNSQN  180
IYQQIVSPVT SRDHSDHLSY DFPLKRKNLD TSSVNFLPHF NTYNTSEIEN NTTTMLFDQS  240
TSDVTHFSNS MENKYMSEMD AYLQKQMMRN SSNQAGLIDD ESVKQHDNGR SNSGSDSDQN  300
EDEDDPKFRR RNGKGQSKNL VAERKRRKKL NERLYALRAL VPKISKLDRA SILGDAIEYV  360
MELEKQVKDL QLELEEHSDD DQSRRNQNQV QPEVLGQNES DQNNRPKSEN VKLSNGSHRG  420
LSSNSNGSID PSGQNQVVDE NDKLQQMEPQ VEVAQLDGNE FFVKVFREHK AGGFVRILEA  480
LNSLGLEVTN VNATRHTCLV SSIFKVEKRD NEMVQADHVR DSLLELTRNP SRGWSEMGRP  540
LSENNANGST DYLHNHQHQH HLENNHQKQA NSHHFHRHHH M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-133223671257Transcription factor MYC2
5gnj_B5e-133223671257Transcription factor MYC2
5gnj_E5e-133223671257Transcription factor MYC2
5gnj_F5e-133223671257Transcription factor MYC2
5gnj_G5e-133223671257Transcription factor MYC2
5gnj_I5e-133223671257Transcription factor MYC2
5gnj_M5e-133223671257Transcription factor MYC2
5gnj_N5e-133223671257Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308328RRRNGKGQSKNLVAERKRRKK
2322329ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-107HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016448229.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
TrEMBLA0A1S3Y8A60.0A0A1S3Y8A6_TOBAC; transcription factor ABORTED MICROSPORES-like
STRINGXP_009616536.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96722227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-132bHLH family protein