PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016448236.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 173aa MW: 19667 Da PI: 8.114

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016448236.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.6	1e-36	43	100	2	59
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++k+++cprC+s +tkfCy+nny+++qPr fCk+C+ryWt+GGalrnv vG+grrknk XP_016448236.1 43 PDKIIPCPRCKSIETKFCYFNNYNVNQPRQFCKGCQRYWTAGGALRNVDVGAGRRKNK 100 68999****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-28	42	100	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-29	45	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.85	47	101	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MVIRTPGIKL FGTTIEVKEK EEENDQISSK NDDDYDQLEN KRPDKIIPCP RCKSIETKFC 60 YFNNYNVNQP RQFCKGCQRY WTAGGALRNV DVGAGRRKNK LPPPPSGGAA GILGLSGSCF 120 FETNSNNYGI HELDFDDSRM LAVKEWHAAE QDEFRHLFPA KRRRNVTSDS QSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Transcriptional repressor of 'CONSTANS' expression (By similarity). Regulates a photoperiodic flowering response. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009617825.1	1e-129	PREDICTED: dof zinc finger protein DOF1.5-like
Refseq	XP_016448236.1	1e-129	PREDICTED: dof zinc finger protein DOF1.5-like
Swissprot	O22967	5e-48	CDF4_ARATH; Cyclic dof factor 4
TrEMBL	A0A1S3Y7I4	1e-128	A0A1S3Y7I4_TOBAC; dof zinc finger protein DOF1.5-like
STRING	XP_009617825.1	1e-128	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7240	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34140.1	5e-47	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Bueso E, et al. Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration. Plant J., 2016. 87(6): p. 583-96 [PMID:27227784]