PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448259.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 236aa    MW: 26184.8 Da    PI: 9.3393
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA263e-08100116117
       CBFB_NFYA   1 deplYVNaKQyqrIlkR 17 
                     +ep+YVNaKQy++Il+R
  XP_016448259.1 100 EEPMYVNAKQYHGILRR 116
                     69**************9 PP
2CBFB_NFYA31.65.5e-101161393558
       CBFB_NFYA  35 rkpylheSRhkhAlrRpRgsgGrF 58 
                     r pylheSRh+hA+rR+R  gGrF
  XP_016448259.1 116 RXPYLHESRHRHAMRRARDGGGRF 139
                     78*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-1698142IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115216.6299142IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-4101116IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.7E-8116139IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGAGAFGEAG RTIYQKSDSD CKRDGKRVEF MPPIMGENLR AANQFELMPP SIAFRSYPYS  60
EVPQYSGGNV AAAFGESTVH QNIERSVHNG RMILPLEVKE EPMYVNAKQY HGILRRXPYL  120
HESRHRHAMR RARDGGGRFL NTKKKIQLTT NNNNNNGNTN ATPSSKGKGS SASEVSSMDS  180
YSGHIGSSNS TAHVQGFQFQ GIHNTENPQL GCHYQWNLND NHCNCMQSGA SNIQPF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123132RHRHAMRRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016448259.11e-178PREDICTED: nuclear transcription factor Y subunit A-7-like
TrEMBLA0A1S3Y8D11e-176A0A1S3Y8D1_TOBAC; nuclear transcription factor Y subunit A-7-like
STRINGXP_009632036.11e-130(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133921516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.17e-18nuclear factor Y, subunit A3