PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448472.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 327aa    MW: 36929.3 Da    PI: 6.9631
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.22e-24128189159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +dDg+ WrKYGqK++ +s++pr+YYrCt +   gC++ k+v+r + +p  + ++Y+g+H+++
  XP_016448472.1 128 VDDGHVWRKYGQKQILDSPYPRHYYRCTNKfdqGCEAIKQVQRIQANPPQFRTIYQGHHTCK 189
                     59**************************99999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-24115189IPR003657WRKY domain
PROSITE profilePS5081121.436123191IPR003657WRKY domain
SuperFamilySSF1182902.22E-23124190IPR003657WRKY domain
SMARTSM007749.6E-34128190IPR003657WRKY domain
PfamPF031065.1E-23129189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDSQWPENSL ADLKMLIKEL NCGQEFTHKL REVIKKPLGN GYTNIFAENL VGKIMSSFCK  60
TLSILNSSNS NENSPIPVVA VFPCRKDGRM SPEDSTGSCK KSSSKDRRGC NKKRKISAKS  120
IKETSTLVDD GHVWRKYGQK QILDSPYPRH YYRCTNKFDQ GCEAIKQVQR IQANPPQFRT  180
IYQGHHTCKT HPTVSRMLLD SSIDYEDTSI LLSFNSKDNH YYHPYNFPTL FSTKKETKEE  240
DSLSCFYPNN NQNQSSTSDY FLPANDSWTP VAETSGDVMA VASSSGSDNV DYISSGSVYS  300
SCCTSTHSLE MDMMLGSIDF DDLPFEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-18128189869OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016448472.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A1S3Y8U00.0A0A1S3Y8U0_TOBAC; probable WRKY transcription factor 70
STRINGXP_009765461.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-32WRKY DNA-binding protein 70