PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016448480.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 211aa MW: 24015.5 Da PI: 8.2911

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016448480.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.7	4.1e-38	123	206	2	83
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssasec.eaesssssas 83 +gkkdrhski+T++g RdRRvRls+++a++fFdLqd+LGfdk+sktieWL+ +++ ai el ++ ++++ ++ +++ssss+++ XP_016448480.1 123 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDMLGFDKASKTIEWLFSKSNNAIAELSENiPQKDYNKIiNSNSSSSEDQ 206 79**************************************************************63333334433333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.8E-38	123	208	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	35.557	125	183	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MFPSGNSQET FNLYISKAFL EKSFTYGHHQ NPSSSSRQED VASFLNFPSP FLDDHNNELP 60 SLNQILSHQH HQDQEAGDHH HAKESNVTHN ISCETSKEEM SIEAAKTSSK KRNLSATPPR 120 RRTGKKDRHS KICTAQGVRD RRVRLSLHIA RKFFDLQDML GFDKASKTIE WLFSKSNNAI 180 AELSENIPQK DYNKIINSNS SSSEDQKSES L

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY166367	6e-96	AY166367.1 Nicotiana sylvestris clone 12.4 TCP gene, partial sequence.
GenBank	AY168163	6e-96	AY168163.1 Nicotiana sylvestris NsTCP1 TCP protein (TCP) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016448480.1	1e-156	PREDICTED: transcription factor TCP12-like, partial
TrEMBL	A0A1S3Y8M4	1e-154	A0A1S3Y8M4_TOBAC; transcription factor TCP12-like
STRING	XP_009603184.1	1e-152	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2436	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	3e-32	TCP domain protein 12