PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016448513.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 186aa MW: 21215.5 Da PI: 6.7961

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016448513.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.7	9.6e-09	124	157	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +qV +WF N+R + XP_016448513.1 124 KWPYPTEEDKAKLVQETGLQLKQVNNWFINQRKR 157 569*****************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51213	9.097	78	98	IPR005539	ELK domain
SMART	SM01188	0.0077	78	99	IPR005539	ELK domain
PROSITE profile	PS50071	11.726	98	161	IPR001356	Homeobox domain
SMART	SM00389	9.1E-11	100	165	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.65E-16	100	163	IPR009057	Homeodomain-like
CDD	cd00086	3.34E-11	101	161	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-25	105	161	IPR009057	Homeodomain-like
Pfam	PF05920	2.8E-18	118	157	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MEAVMACWEI DQSLQNLTGV GPGEGTGATM SDDDDDQTES ETNTNCYNGV LDVSDSTGFG 60 PLVPTESERF LMERVRQELK QEFKQGYKEK IVDIREEILR KRRAGKLPGD TTSALKAWWK 120 SHSKWPYPTE EDKAKLVQET GLQLKQVNNW FINQRKRNWH TTPSSSSTQK SKRKSAGEKS 180 RNDHFS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009775738.1	1e-137	PREDICTED: homeobox protein knotted-1-like LET12 isoform X1
Refseq	XP_016448513.1	1e-138	PREDICTED: homeobox protein knotted-1-like LET12 isoform X1
Swissprot	P48000	1e-101	KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBL	A0A1S3Y968	1e-136	A0A1S3Y968_TOBAC; homeobox protein knotted-1-like LET12 isoform X1
TrEMBL	A0A1U7WAR8	1e-136	A0A1U7WAR8_NICSY; homeobox protein knotted-1-like LET12 isoform X1
STRING	XP_009775738.1	1e-137	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1432	24	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.2	2e-91	KNOTTED1-like homeobox gene 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]