PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448514.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 175aa    MW: 20055.4 Da    PI: 7.417
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448514.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.88.6e-091241572154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +qV +WF N+R +
  XP_016448514.1 124 KWPYPTEEDKAKLVQETGLQLKQVNNWFINQRKR 157
                     569*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512139.0977898IPR005539ELK domain
SMARTSM011880.00777899IPR005539ELK domain
PROSITE profilePS5007111.72698161IPR001356Homeobox domain
SMARTSM003899.1E-11100165IPR001356Homeobox domain
SuperFamilySSF466892.18E-16100163IPR009057Homeodomain-like
CDDcd000864.89E-11101161No hitNo description
Gene3DG3DSA:1.10.10.601.1E-25105161IPR009057Homeodomain-like
PfamPF059202.5E-18118157IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEAVMACWEI DQSLQNLTGV GPGEGTGATM SDDDDDQTES ETNTNCYNGV LDVSDSTGFG  60
PLVPTESERF LMERVRQELK QEFKQGYKEK IVDIREEILR KRRAGKLPGD TTSALKAWWK  120
SHSKWPYPTE EDKAKLVQET GLQLKQVNNW FINQRKRNWH TTPSSSSTQK SKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154174RKRNWHTTPSSSSTQKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775739.11e-129PREDICTED: homeobox protein knotted-1-like LET12 isoform X2
RefseqXP_016448514.11e-129PREDICTED: homeobox protein knotted-1-like LET12 isoform X2
SwissprotP480003e-99KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A1S3Y9041e-127A0A1S3Y904_TOBAC; homeobox protein knotted-1-like LET12 isoform X2
TrEMBLA0A1U7WM491e-127A0A1U7WM49_NICSY; homeobox protein knotted-1-like LET12 isoform X2
STRINGXP_009775738.11e-127(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.12e-91KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]