PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448524.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 283aa    MW: 32334.1 Da    PI: 6.2622
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448524.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.39.8e-3393194173
             TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............................s 66 
                     a+g+kdrhsk++T++g+RdRRvRls ++a++f+d+qd+LG+ ++s++i+WL+++ak+ai++l +                              +
  XP_016448524.1  93 ATGRKDRHSKVSTAKGPRDRRVRLSPNTAIQFYDVQDRLGYGRPSEAIDWLIKKAKAAIDALGEFpklnakmqysfdqlldeskvqsprfrqqnC 187
                     589***********************************************************988767665555555555555444444444433 PP

             TCP  67 sssasec 73 
                      +++sec
  XP_016448524.1 188 GIPNSEC 194
                     3333444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-3094202IPR005333Transcription factor, TCP
PROSITE profilePS5136930.60296154IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MNHQLQISSE EDGSSEEEED EEEIFQKNGI ENLDSHCQNQ NLQQLPMPLC PKPAKWANFT  60
TYKEELNKVT KGMKLKRAKQ DVIEVDRGRI IRATGRKDRH SKVSTAKGPR DRRVRLSPNT  120
AIQFYDVQDR LGYGRPSEAI DWLIKKAKAA IDALGEFPKL NAKMQYSFDQ LLDESKVQSP  180
RFRQQNCGIP NSECGVLQNH QQEVNYDIPI QNVSLFSSAD GAKIPFFSEF QSHFLNFQSF  240
QEDTIFSSSD HQDSLLTTSI NPLDSNSNLE MTRYKRSLNG NVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-18101154154Putative transcription factor PCF6
5zkt_B3e-18101154154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016448524.10.0PREDICTED: uncharacterized protein LOC107773633, partial
RefseqXP_018628112.10.0PREDICTED: transcription factor TCP3-like
TrEMBLA0A1S3Y9150.0A0A1S3Y915_TOBAC; uncharacterized protein LOC107773633
STRINGXP_009607455.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.14e-27TCP domain protein 10