PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448544.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 170aa    MW: 19444.1 Da    PI: 9.6469
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448544.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.42.2e-43101421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                     lppGfrF Pt+eelv++yL++k++gk+ l++++vi+ v+iy+++P +Lp+     ++ ++++w+fF++ + ++a+g r++r t++gyWkatg+  
  XP_016448544.1  10 LPPGFRFYPTEEELVDFYLRNKLNGKReLDIQRVIPVVNIYQHNPCQLPEmageGIRDDSEQWFFFIPIQDREARGGRPTRLTTEGYWKATGTPG 104
                     79**********************9998999999***************535555555777********************************** PP

             NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      v+s++++ +g k+t+vfykgrap+g+kt W m+ey++
  XP_016448544.1 105 YVYSSNNRIIGGKRTMVFYKGRAPNGKKTLWKMNEYKA 142
                     ************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-446149IPR003441NAC domain
PROSITE profilePS5100543.18210164IPR003441NAC domain
PfamPF023658.1E-2211141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MEMYDNSNLL PPGFRFYPTE EELVDFYLRN KLNGKRELDI QRVIPVVNIY QHNPCQLPEM  60
AGEGIRDDSE QWFFFIPIQD REARGGRPTR LTTEGYWKAT GTPGYVYSSN NRIIGGKRTM  120
VFYKGRAPNG KKTLWKMNEY KASDGEASAT NSVTNLKVSG TLKKLGFLTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-291014115139Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755212e-80HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016448544.11e-125PREDICTED: NAC domain-containing protein 90-like
SwissprotQ9FMR31e-60NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A1S3Y9341e-124A0A1S3Y934_TOBAC; NAC domain-containing protein 90-like
STRINGXP_009620854.11e-114(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24942357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.15e-63NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]