PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016448554.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 247aa MW: 28370.6 Da PI: 6.6022

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016448554.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98.7	8.3e-31	14	93	51	129
NAM 51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 +k +++ewyfFs rd+kyatg r+nrat sgyWkatgkd++vl+ +g l+g++ktLvfy++rap+g kt W+mhe+rle XP_016448554.1 14 AKLNSSEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRTVLDPrTGGLIGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 93 344678***********************************9878889*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.951	1	111	IPR003441	NAC domain
SuperFamily	SSF101941	3.14E-38	13	111	IPR003441	NAC domain
Pfam	PF02365	7.6E-15	20	92	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
TNYIQYTFVK LEVAKLNSSE WYFFSFRDRK YATGFRTNRA TISGYWKATG KDRTVLDPRT 60 GGLIGMRKTL VFYRNRAPNG IKTGWIMHEF RLENPHIPPK EDWVLCRVFH KGTKDDQNNT 120 SNNLSSENMY EVSVTSPEFV VSPLNNMDNH GSTMPKLLHY GDGDGYHTLT GSNSVHQNQN 180 SSNFQLSQEI NKVLANEMVH SKCGKEDEFG FLYDMNFEEY SSLQDGGVHN SCIGDIRFED 240 ENSLVFI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-27	14	111	66	165	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-27	14	111	66	165	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-27	14	111	66	165	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-27	14	111	66	165	NO APICAL MERISTEM PROTEIN
3swm_A	6e-27	14	111	69	168	NAC domain-containing protein 19
3swm_B	6e-27	14	111	69	168	NAC domain-containing protein 19
3swm_C	6e-27	14	111	69	168	NAC domain-containing protein 19
3swm_D	6e-27	14	111	69	168	NAC domain-containing protein 19
3swp_A	6e-27	14	111	69	168	NAC domain-containing protein 19
3swp_B	6e-27	14	111	69	168	NAC domain-containing protein 19
3swp_C	6e-27	14	111	69	168	NAC domain-containing protein 19
3swp_D	6e-27	14	111	69	168	NAC domain-containing protein 19
4dul_A	6e-27	14	111	66	165	NAC domain-containing protein 19
4dul_B	6e-27	14	111	66	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016448554.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like, partial
TrEMBL	A0A1S3Y942	0.0	A0A1S3Y942_TOBAC; protein CUP-SHAPED COTYLEDON 3-like
STRING	XP_009779378.1	1e-164	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1882	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-63	NAC domain containing protein 74