PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016448572.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 196aa MW: 21661 Da PI: 7.5855

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016448572.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.4	2.2e-07	168	194	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN+++ L+el+P + XP_016448572.1 168 SHSLAERLRREKINEKLRCLQELVPGC 194 8************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.11E-8	162	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.16E-5	162	196	No hit	No description
PROSITE profile	PS50888	12.163	164	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-8	167	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.0E-5	168	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MGDHSAADRF QALNSSSSSS FMNSNNMELL NSINLEAENF SSNINQHGFL ALSNEDFSNH 60 HQLPNMAFHT DMNLSSSISA QNMYDPAAAA QFFTLGGPSN YGCSSNMNSI PESESMLNNN 120 IPTPPPLVSG TAKSCEGRKR KRNNQKEAAE KPREVVHVRA KRGQATDSHS LAERLRREKI 180 NEKLRCLQEL VPGCYK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016448572.1	1e-143	PREDICTED: transcription factor BEE 1-like, partial
TrEMBL	A0A1S3Y921	1e-142	A0A1S3Y921_TOBAC; transcription factor BEE 1-like
STRING	XP_009779032.1	1e-141	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9069	17	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	2e-25	bHLH family protein