PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448638.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 279aa    MW: 31327.9 Da    PI: 6.5116
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448638.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.32.4e-294101389
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 
                     g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+++ k++i++l+ ++ ++  ++  +++++  a+n +++        
  XP_016448638.1   4 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIEATKHEIDKLPPLQIPPGYFAqFQGDHHFDAANLRAKskvidtdt 98 
                     78*************************************************************77777554322222222221111122333333 PP

             TCP  89 ..k 89 
                        
  XP_016448638.1  99 vyG 101
                     321 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.1E-275100IPR005333Transcription factor, TCP
PROSITE profilePS5136929.247563IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
RTFGGKDRHS KVCTIRGLRD RRIRLSVPTA IQLYDLQDRL GLSQPSKVVD WLIEATKHEI  60
DKLPPLQIPP GYFAQFQGDH HFDAANLRAK SKVIDTDTVY GKNKSIASNE QENQEEIGGY  120
VPQISAQSFF PLVNKSPNLP GLINSSMPFN SYYPWEPNSN LSLAHFGQPQ IEESSQNNFP  180
LSLASSLSLP SGSQLYFNPT ATTFSPMISP YMTNYPIESD PRAQLNHFHF LSSSSQHVLP  240
NPSVPTLNLI KPFSLNDNPR WIHSREDEDD SQPHEGGNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-191064155Putative transcription factor PCF6
5zkt_B3e-191064155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620849.10.0PREDICTED: transcription factor TCP5
RefseqXP_009620850.10.0PREDICTED: transcription factor TCP5
RefseqXP_016448638.10.0PREDICTED: transcription factor TCP5-like, partial
TrEMBLA0A1S3Y9G10.0A0A1S3Y9G1_TOBAC; transcription factor TCP5-like
STRINGXP_009620849.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.18e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5