PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016449035.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 271aa    MW: 29747.6 Da    PI: 8.5684
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016449035.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26035.52.9e-111189885
          DUF260  8 lrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqq 85
                    ++ kC k+ Cv+   f   +  ++ ++++++G +   ++l+ + p+e++ +a+++++ eA++r+rdPv Ga++ +  l+ 
  XP_016449035.1 11 KKSKCMKErCVFQ-FFSPFDIPDYHAIKRIYGSNAFGRMLTMVvPDERKAEAIRCIAEEARCRIRDPVGGAFREMELLKM 89
                    3459998868886.668888899******************9955666899**********************9988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508918.733106IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-101288IPR004883Lateral organ boundaries, LOB
Gene3DG3DSA:3.40.50.7205.6E-38138269IPR016040NAD(P)-binding domain
SuperFamilySSF517351.17E-33140268IPR016040NAD(P)-binding domain
PfamPF001062.2E-32143269IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000814.4E-9143160IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000814.4E-9218229IPR002347Short-chain dehydrogenase/reductase SDR
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MACPLHIFER KKSKCMKERC VFQFFSPFDI PDYHAIKRIY GSNAFGRMLT MVVPDERKAE  60
AIRCIAEEAR CRIRDPVGGA FREMELLKMA KPTSTHSSVN SYHQELILGA GFTERIGTGG  120
VRAPVETTEQ AGVDAAAKVE GPVVIVTETS RGIGKAIALA LGKAGCKVLV NYAISSKDAE  180
EVSKEIEACG GEAFTFVGNI SKQEDVESMI KTVVGRWGTV DILINNAGVT RDTLLMRMNQ  240
SQWQEVIEFS LTGVFLCTQA AAKIMMKKKK V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1edo_A8e-631422702130BETA-KETO ACYL CARRIER PROTEIN REDUCTASE
2cdh_G8e-631422702130KETOACYL REDUCTASE
2cdh_H8e-631422702130KETOACYL REDUCTASE
2cdh_I8e-631422702130KETOACYL REDUCTASE
2cdh_J8e-631422702130KETOACYL REDUCTASE
2cdh_K8e-631422702130KETOACYL REDUCTASE
2cdh_L8e-631422702130KETOACYL REDUCTASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0142051e-168BT014205.1 Lycopersicon esculentum clone 133382F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016449035.10.0PREDICTED: 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic-like
SwissprotP286432e-67FABG_CUPLA; 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic
TrEMBLA0A1S3Y9Z60.0A0A1S3Y9Z6_TOBAC; 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic-like
STRINGXP_009616064.12e-81(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Klein B,Pawlowski K,Höricke-Grandpierre C,Schell J,Töpfer R
    Isolation and characterization of a cDNA from Cuphea lanceolata encoding a beta-ketoacyl-ACP reductase.
    Mol. Gen. Genet., 1992. 233(1-2): p. 122-8
    [PMID:1376402]