PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016449315.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 249aa    MW: 27665.9 Da    PI: 4.6556
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016449315.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.3e-0812352347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W+ Ia +++ gRt++++k++w++ 
   XP_016449315.1 12 RWSQIAGRLP-GRTDNEIKNFWNST 35
                     5*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.388140IPR017930Myb domain
SuperFamilySSF466897.01E-81144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-111137IPR009057Homeodomain-like
CDDcd001678.99E-61236No hitNo description
PfamPF002491.2E-51235IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MLTPIYFSLF QRWSQIAGRL PGRTDNEIKN FWNSTLKKRL KNSSSSSTPS PNASDSSSEP  60
CKDLNMGVNQ GFMSMEKHKL MAMYMDSTSS SSSSMALNTI IDPLPTLEHS LMNMPSRFGA  120
PSYLTTQPCM AQGGNVTNGS LFYGNNHGIF GGNLGIEGEI YVPPLESVSI EYQNVEVGNI  180
VERRSQNNNP NNNMTNLTSH FNSSSNIKVE NFGGIGNYWE GDDLKVGEWD LEELMKDVSP  240
FPFLDFQIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016449315.10.0PREDICTED: transcription factor MYB46-like
TrEMBLA0A1S3YAS40.0A0A1S3YAS4_TOBAC; transcription factor MYB46-like
STRINGXP_009765231.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.18e-20myb domain protein 83