PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016449737.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 179aa    MW: 20881.2 Da    PI: 10.6659
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016449737.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.81.4e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n+s rqvtfskRrng+lKKA+EL +LCda+v +iifsstgklye+s+
  XP_016449737.1 10 RIDNSSSRQVTFSKRRNGLLKKAKELAILCDAQVGLIIFSSTGKLYEFSN 59
                    8***********************************************95 PP
2K-box76.76.3e-2681171999
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +  ++ + +q+e+a L++++++Lq+++R+++Ge+L  L++k+Lq+Le++Le+s++ iR kK+++l+++i+el  k   +++en +L +k++
  XP_016449737.1  81 NPVSELKLWQKEAAMLRQQLQELQQNHRQVMGEQLYGLTIKDLQHLENRLETSIRGIRMKKEQILHDEIQELSWKGSLMHQENLELVQKVK 171
                     45677899********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.441161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.27E-32290IPR002100Transcription factor, MADS-box
CDDcd002651.36E-42276No hitNo description
PRINTSPR004042.8E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-283859IPR002100Transcription factor, MADS-box
PfamPF014863.5E-2385170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.63386178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSSSRQVT FSKRRNGLLK KAKELAILCD AQVGLIIFSS TGKLYEFSNT  60
SMKSIVERYN KTKDERNQLH NPVSELKLWQ KEAAMLRQQL QELQQNHRQV MGEQLYGLTI  120
KDLQHLENRL ETSIRGIRMK KEQILHDEIQ ELSWKGSLMH QENLELVQKV KVNAKNKGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-20180176MEF2C
5f28_B2e-20180176MEF2C
5f28_C2e-20180176MEF2C
5f28_D2e-20180176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754412e-46HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016449737.11e-128PREDICTED: MADS-box transcription factor 27-like isoform X4
SwissprotQ6EP492e-86MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1S3YCL01e-126A0A1S3YCL0_TOBAC; MADS-box transcription factor 27-like isoform X4
STRINGXP_009764343.11e-120(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-81AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]