PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016449992.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 137aa    MW: 15784.2 Da    PI: 9.2184
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016449992.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.54.7e-15854450
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    + k+n+  t+  R++ i  K  ELS+LCd++ + ii s++g+l++++
  XP_016449992.1  8 KKKTNNPKTYQVRKECIKRKTMELSTLCDIKCCTIITSPQGELQTWP 54
                    57899*****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.993153IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-14876IPR002100Transcription factor, MADS-box
PfamPF003196.9E-10953IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MAEENQNKKK TNNPKTYQVR KECIKRKTME LSTLCDIKCC TIITSPQGEL QTWPENLDAV  60
KQVLNLYTKT LTPNKKANKE LSEKEEEIDI LTLVESKLDA VNNRILYLEN KNAGFVSNSK  120
GKVRNRGLND LLIDWKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016449992.19e-95PREDICTED: agamous-like MADS-box protein AGL81
TrEMBLA0A1S3YDC02e-93A0A1S3YDC0_TOBAC; agamous-like MADS-box protein AGL81
STRINGXP_009802745.12e-93(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37231639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39810.17e-10AGAMOUS-like 98