PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016450158.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 157aa    MW: 18335.2 Da    PI: 9.5733
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016450158.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.91.3e-131152344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i+ +  r+ tf kR+ g++KK +E  +LC+++ ++i++++++
  XP_016450158.1 11 ISKEKGRNATFKKRKDGLMKKLYEFTTLCNVNGCMIMYGPKQ 52
                    7888899********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-13165IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.175151IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-17161IPR002100Transcription factor, MADS-box
CDDcd002661.57E-16270No hitNo description
PRINTSPR004041.9E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-141152IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MGRAKLKMEL ISKEKGRNAT FKKRKDGLMK KLYEFTTLCN VNGCMIMYGP KQSNGSNSEP  60
EIWTNNSMQS GNSTNKTVQV EEIQNLIDEY KKESSMQSGS TKTFGLSDYF LDRNKKVEEE  120
LIKLRKMNMQ KKYPCWLEFM NQLSEIKLRE FLTLLDD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774508.11e-110PREDICTED: agamous-like MADS-box protein AGL80
RefseqXP_016450158.11e-112PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A1S3YDT31e-110A0A1S3YDT3_TOBAC; agamous-like MADS-box protein AGL80
TrEMBLA0A1U7W7B91e-109A0A1U7W7B9_NICSY; agamous-like MADS-box protein AGL80
STRINGXP_009774508.11e-110(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-18M-type_MADS family protein