PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016450284.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 810aa    MW: 90744.6 Da    PI: 4.9916
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016450284.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.91.5e-25455508155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+ W+ eLHe+F++av+qL G ++A+Pk+ilelm+v+ L +ehv+SHLQkYRl
  XP_016450284.1 455 KARVLWSAELHEKFLQAVNQL-GMDRAVPKNILELMNVPWLKREHVASHLQKYRL 508
                     689******************.********************************7 PP
2Response_reg72.61.6e-242803845109
                     SSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEE CS
    Response_reg   5 dDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdf 97 
                     dD+p+ +++l+++l+k +y ev+++  +e al ll+e++  ++l++ D+ mp+mdG++ll+ i  e  +lp+i+++a ++ + + + +  Ga+d+
  XP_016450284.1 280 DDDPTCLKILEKMLKKCHY-EVTTCNRAEVALSLLHENKngFHLVISDVHMPDMDGFKLLEYIGLEM-DLPVIMMSADDSRNVVMKGVIHGAHDY 372
                     9******************.***************999999**********************6654.8************************** PP

                     EESS--HHHHHH CS
    Response_reg  98 lsKpfdpeelvk 109
                     l Kp+ +e+l +
  XP_016450284.1 373 LIKPVRIEALKN 384
                     ********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011036.141275390IPR001789Signal transduction response regulator, receiver domain
SMARTSM004482.1E-22278386IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.4E-36280397No hitNo description
PfamPF000721.7E-21280384IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.26E-25280389No hitNo description
SuperFamilySSF521723.27E-30280392IPR011006CheY-like superfamily
SuperFamilySSF466898.42E-18453512IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-26454512IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-22455508IPR006447Myb domain, plants
PfamPF002493.8E-7459507IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MVKTSKIVPQ KEKAFSSQSA ADKTPVDPRP EECVPVACVL TSDFKLDKGS QVPGRCVGKD  60
AALRPSSVEE EAPASVPKLR DSGRVPELLE IEDVSHRSRW MEDMSERALP ESFRTEENAP  120
DDSFSAVAIE GSPTFPAFSA GAIQEAQALR ALELDRPYDG EDPFRDLFIS VEDTAGTNDA  180
SDLFHGVQQA LNQAAAVHRE SCSQSRTEMR RYKAELQWVT EKRNSLKLLL GQRREEIKNF  240
QAELARAHQD QIDLSEQGNQ KKLYAYRVVE IDIYSDNFLD DDPTCLKILE KMLKKCHYEV  300
TTCNRAEVAL SLLHENKNGF HLVISDVHMP DMDGFKLLEY IGLEMDLPVI MMSADDSRNV  360
VMKGVIHGAH DYLIKPVRIE ALKNIWQHVV RKNKDKWKGK VFDQSDTVED GEWPQEPPED  420
VEYSSSANEG SLKSSKKRKE EDETEERDDM VALKKARVLW SAELHEKFLQ AVNQLGMDRA  480
VPKNILELMN VPWLKREHVA SHLQKYRLLL KKSMGVSQHQ SGLNYSFTGY SEATFGTPPN  540
GLDLQTLAAT IQLPAQSLAT LGPAALSQSA TKYSLYVPLV DQRNHFSFEN PKLRFQGQQE  600
LNNSNNQVNL LYGIPTAVEP KQSLRNGIVD NARGSIYNQA SQAYSAVDFS LNQNMQLRRR  660
GFPASGNSAT ATLATKGMLK EEVNSDFRGS RGFSPNDDSF SGLYQQKTQD WRLQNVGSTF  720
DTYIQHGISS LEKSGQNTNA PIAETVLSNE QETGRVNLMG RSQPNSILGD EPFGQEDLMS  780
AFFEQQQRQN VGPVETAFGD DDDPLDNLPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-19452512262ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016450284.10.0PREDICTED: two-component response regulator ARR2-like
TrEMBLA0A1S3YDS20.0A0A1S3YDS2_TOBAC; two-component response regulator ARR2-like
STRINGXP_009590424.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14508910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-121response regulator 2