PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016450516.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 357aa    MW: 39653 Da    PI: 7.7931
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016450516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.61.8e-2199257128
             NAM  57 ewyfFskrdkkyatgkrknra...........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     + +fF++ +k+y+tg+rk+r+             + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  XP_016450516.1   9 SRHFFHRPSKAYTTGTRKRRKiltecqdlaaaGGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 92 
                     569*****************87999888876544678************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.2871111IPR003441NAC domain
SuperFamilySSF1019411.29E-236111IPR003441NAC domain
PfamPF023653.0E-71192IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGVTRDGLSR HFFHRPSKAY TTGTRKRRKI LTECQDLAAA GGETRWHKTG KTRPVMVNGK  60
QKGCKKILVL YTNFGKNRKP EKTNWVMHQY HLGQHEEEKE GELVVSKIFY QTQPRQCNWS  120
NTTTSTTVGG EASSDLNSRR DSGSGSCSSS KDINNNNIPS SHRDELSAAV CAAMSSYATM  180
DIQQFKAEHF SFLPFRKSFD EAGIVVGEGG GSAAAAAAPV GTSDARDIHE THHVTHEQQL  240
LQHHHQVATA SFHISRPSPP ISAIITPPPL HNTSIILGHD DAFHVPRSII LPNENFQQQQ  300
QHHKLEGRSA SELEQLIMGC TSTDIKGDQS SITNPQDADW LKYSHFWPDP DNPDHHA
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016450516.10.0PREDICTED: uncharacterized protein LOC107775305
SwissprotQ9M0F81e-110NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1S3YE480.0A0A1S3YE48_TOBAC; uncharacterized protein LOC107775305
STRINGXP_009602846.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40572444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.12e-76NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]