PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016450672.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 230aa    MW: 25897.8 Da    PI: 8.2952
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016450672.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.17.8e-173888155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y GVr+++ +grWvAeI+d s   ++ r +lg+f+ aeeAa a++ a++ l+g
  XP_016450672.1 38 KKYIGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDRAEEAALAYDSAARLLRG 88
                    59********.7*********42...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.50E-313898No hitNo description
PROSITE profilePS5103219.8093996IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-193997IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.5E-283996IPR001471AP2/ERF domain
PfamPF008472.0E-113988IPR001471AP2/ERF domain
SMARTSM003801.6E-3139102IPR001471AP2/ERF domain
PRINTSPR003673.2E-74051IPR001471AP2/ERF domain
PRINTSPR003673.2E-76278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MESSKPPSSE SLTNSTKNIQ EKQMAKTKSK LISSNDGKKY IGVRQRPSGR WVAEIKDSSQ  60
KLRLWLGTFD RAEEAALAYD SAARLLRGRN AKTNFKYQGI LKPNEQNCSL LGKNPRLYQL  120
LKHAIMKKLA GNKYQNEIET EPFVQENTGC NQDKEEICRI QLQGSSSKVY SSVIVAPSFS  180
ASVTDQSGKK DEEEEEEEEN HYQTSAQLFE CLFSHANKSS EENNGLNSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-153895159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-153795362ATERF1
3gcc_A6e-153795362ATERF1
5wx9_A3e-14391091478Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016450672.11e-170PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A1S3YF721e-169A0A1S3YF72_TOBAC; ethylene-responsive transcription factor RAP2-11-like
STRINGXP_009617997.11e-153(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-17related to AP2 11