PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016450765.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 533aa    MW: 58551 Da    PI: 10.7301
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016450765.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.88e-151349541
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                     +  r+ ++ kR++g++KK  ELS+LCd+e+a ii+s
  XP_016450765.1 13 RDAERKASYKKRKKGLFKKVLELSTLCDVEIAAIIYS 49
                    567899******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.142149IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-22396IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-9323IPR002100Transcription factor, MADS-box
PfamPF003195.9E-141149IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MARRKVRLAF IIRDAERKAS YKKRKKGLFK KVLELSTLCD VEIAAIIYSA FHRGAEVWPS  60
HEQVMRIIER FRALPEIEQS KRQVNLEGFT RQRIKKLEDQ LRKIRKENRI KEFTNLMYDL  120
LGGQEVPQNM HPYDLNDLTY VIDQNLQKVY ERMAEEAKKN GFTFDVPLTG PTGPPRGTNF  180
EEPRALLAPP PPVVPPVAPT SMVRPMASIS MVRPMAPSMV RPFAASSYAP PLPVPPPRFV  240
HPMGLPRALS PVPPPRMFRP VGLSSWPPAP VSQQIFRPMV AQMVSPMPPV VDTRSWATRV  300
ASSPMPPVVD TRSWATRVAS SPMPPTVAPR SWAPRVAFPM PPAAAPRSWA PSVASPMPPA  360
AGPTSWAPSL ASPMPPAAAP RSWAPSVASP MPPAAAPTSW APSLASPMPP AADHRSWAPS  420
VASPMPPAVA PRSWAPGVAS SMPLQMAPAM SPRMDFPMIP VMSSPMVPSV TPPMANSMNS  480
SVDASMPMTN YKNYFYGNPQ SPPDWEEDAL MAFVNGTSSS NIFEEPNQHN NNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVRLAFIIRDAERKASYKKRK
22125KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016450765.10.0PREDICTED: vegetative cell wall protein gp1-like
TrEMBLA0A1S3YEZ30.0A0A1S3YEZ3_TOBAC; vegetative cell wall protein gp1-like
STRINGXP_009786318.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-35AGAMOUS-like 80