PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016450856.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 667aa    MW: 73562.2 Da    PI: 6.4728
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016450856.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.1e-15254313155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_016450856.1 254 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 313
                     57*******************666664478446*************************98 PP
2AP246.87.5e-15356407155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_016450856.1 356 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 407
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-12254313IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-17254323IPR016177DNA-binding domain
CDDcd000187.59E-23254323No hitNo description
Gene3DG3DSA:3.30.730.108.4E-16255322IPR001471AP2/ERF domain
PROSITE profilePS5103219.23255321IPR001471AP2/ERF domain
SMARTSM003801.2E-29255327IPR001471AP2/ERF domain
PRINTSPR003676.8E-6256267IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-17356416IPR016177DNA-binding domain
PfamPF008479.3E-10356407IPR001471AP2/ERF domain
CDDcd000183.88E-25356417No hitNo description
Gene3DG3DSA:3.30.730.107.0E-18357415IPR001471AP2/ERF domain
PROSITE profilePS5103219.177357415IPR001471AP2/ERF domain
SMARTSM003802.7E-33357421IPR001471AP2/ERF domain
PRINTSPR003676.8E-6397417IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MASSMNNWLG FSLSAHEELT SQTSQEISGS VDVSGECFDL TSHDSTLPSL NVVPHNTPFG  60
IFEAFNRNHQ SQDWSSHDPN YKTTSEMSML MGISCNTSQH LENQEPPKLE NFLGIGEVQN  120
RNNNINGDYS IYSSVTNTTN NIGSNTNNNN TIGLSMIKNW LRNNPNTTTP SENDNKEGEG  180
VVVGGGNNAQ SLSLSMSTGG GGGGGGGENS CSSENNKQQE NANGCNGSIV DGQNNGAIEA  240
VPRKSIDTFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQTRKGRQVY LGGYDKEEKA  300
ARAYDLAALK YWGPTTTTNF PISNYEKELE EMKHMTRQEY VASLRRKSSG FSRGASIYRG  360
VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFEINRYD  420
VKSILESSTL PIGGAAKRLK DAEQADQIAR DYQRVSQETI GSHLTNGTIS SYGANANHIW  480
SNIAFQQAQP LNMHYPYSQQ QQQQQQRLWC KQEVQDSDHM TQNFQDFHQL PHGNIAHNFM  540
QPTSALHNLM GLDTSSTSME HNNVTYQGVG YASSPSGGFV LPQLSQGNGY GENEVKQQLG  600
NENIFGYYHS QQSTSNGSVK AAGLYDPQDS VNCNNWMSTA VPALASRNNT VAICHGGPPT  660
FTVWNDT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016450856.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1S3YF420.0A0A1S3YF42_TOBAC; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_009801491.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-142AP2 family protein