PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016451261.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 644aa MW: 73068.5 Da PI: 5.9011

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016451261.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	49.9	6.4e-16	419	464	3	48
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 + isledl++++ ++ ++AA +L+v++++ KriCR++GI+RWP k XP_016451261.1 419 DMISLEDLQQNYGKKREEAAESLQVSVSTFKRICRKFGIDRWPTAK 464 679****************************************866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.957	400	490	IPR003035	RWP-RK domain
Pfam	PF02042	4.5E-16	421	467	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MCEQHKTLEF GTEEYNSNSN YGIPIPTQDV VFWQAECYSE IPAGSNFDIP SSSSNNLPGY 60 INFPANSTYN ENVEIIHDSF GKAAADQVVS RKLFCFANGH VLDPQRVDLF YLDLSKRAYQ 120 VTIHRHNGFD FFSLTKVVDV SDLFQLLKVF LSSKLRLMFL IDDEYLLLTD ELNLVVTGQP 180 HLQMEVKLAF SLQNLMRSTM HYAISQAYSS RKTKSQNVKS FVVCECENEL FLDHCRENSS 240 QSIQSFIPFG GNIKLSPCRV ASVVYSLYLY GEVQENFSIL GRVVDVSFSS VKFSYRTDPH 300 SSPGHSQDYH FHGILSLSLL VPTEQSPVEF FEIVYCPQRA HLTSKDQRSP GTNKQKQYGL 360 SPCLDSAVVQ SSSNERQMLL EAFEDDAIYS HESQEVVAES QTNIQKKRKK SSTMWTAADM 420 ISLEDLQQNY GKKREEAAES LQVSVSTFKR ICRKFGIDRW PTAKRNKDKC LFSARKCDAP 480 LIAKVRTSQL LQNGMPCEDR ETTCISRPKR KGKEKEAADN IEAINHFEEQ PSEIQNRTPK 540 RQAVDCATKD SSCLNSITGY VVDDMVSTRM GVQAYLEAIS IEQLNSISCN ENTSQNTKLL 600 FDNLIALPLK DLINPEKEIY MKETLCILAE NLSFFFSRTS ETDS

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MCEQHKTLEF GTEEYNSNSN YGIPIPTQDV VFWQAECYSE IPAGSNFDIP SSSSNNLPGY  60
INFPANSTYN ENVEIIHDSF GKAAADQVVS RKLFCFANGH VLDPQRVDLF YLDLSKRAYQ  120
VTIHRHNGFD FFSLTKVVDV SDLFQLLKVF LSSKLRLMFL IDDEYLLLTD ELNLVVTGQP  180
HLQMEVKLAF SLQNLMRSTM HYAISQAYSS RKTKSQNVKS FVVCECENEL FLDHCRENSS  240
QSIQSFIPFG GNIKLSPCRV ASVVYSLYLY GEVQENFSIL GRVVDVSFSS VKFSYRTDPH  300
SSPGHSQDYH FHGILSLSLL VPTEQSPVEF FEIVYCPQRA HLTSKDQRSP GTNKQKQYGL  360
SPCLDSAVVQ SSSNERQMLL EAFEDDAIYS HESQEVVAES QTNIQKKRKK SSTMWTAADM  420
ISLEDLQQNY GKKREEAAES LQVSVSTFKR ICRKFGIDRW PTAKRNKDKC LFSARKCDAP  480
LIAKVRTSQL LQNGMPCEDR ETTCISRPKR KGKEKEAADN IEAINHFEEQ PSEIQNRTPK  540
RQAVDCATKD SSCLNSITGY VVDDMVSTRM GVQAYLEAIS IEQLNSISCN ENTSQNTKLL  600
FDNLIALPLK DLINPEKEIY MKETLCILAE NLSFFFSRTS ETDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	405	409	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016451261.1	0.0	PREDICTED: uncharacterized protein LOC107775968
TrEMBL	A0A1S3YG55	0.0	A0A1S3YG55_TOBAC; uncharacterized protein LOC107775968
STRING	XP_009618484.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15528	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-11	Nin-like family protein